Basic Information
Locus ID:
Lb1G05999
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 389920479 | 389925295 | - | Lb1G05999 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 40,071.87 Da | 47.15 | 68.94 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 64 | 359 | 1.2E-88 | IPR033389 |
| Pfam | PF02309 | AUX/IAA family | 64 | 359 | 1.2E-88 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 247 | 349 | 7.36E-22 | - |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 247 | 349 | 7.36E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 245 | 361 | 5.9E-43 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 245 | 361 | 5.9E-43 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 248 | 350 | 27.165665 | IPR000270 |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 248 | 350 | 27.165665 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 213 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65670.2 | indole-3-acetic acid inducible 9. auxin (indole-3-acetic acid) induced gene | 0 |
| RefSeq | XP_010275506.1 | PREDICTED: auxin-responsive protein IAA9 isoform X3 [Nelumbo nucifera] | 0 |
| Q38827 | Auxin-responsive protein IAA9 OS=Arabidopsis thaliana OX=3702 GN=IAA9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8B3T8 | Auxin-responsive protein OS=Nelumbo nucifera OX=4432 GN=LOC104610541 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology