Basic Information
Locus ID:
Lb1G05968
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 389079917 | 389081636 | + | Lb1G05968 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 58,209.29 Da | 45.70 | 64.26 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 181 | 510 | 1.46525E-45 | - |
| CDD | cd00200 | WD40 | 181 | 510 | 1.46525E-45 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 213 | 246 | 0.17 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 377 | 410 | 0.026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 464 | 509 | 0.0061 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 293 | 321 | 4.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 181 | 206 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 377 | 410 | 0.026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 327 | 362 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 181 | 206 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 464 | 509 | 0.0061 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 327 | 362 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 213 | 246 | 0.17 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 293 | 321 | 4.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 170 | 512 | 2.72E-52 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 170 | 512 | 2.72E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 372 | 522 | 9.3E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 372 | 522 | 9.3E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 120 | 279 | 1.4E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 280 | 371 | 1.9E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 120 | 279 | 1.4E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 280 | 371 | 1.9E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 372 | 411 | 7.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 325 | 363 | 2.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 208 | 246 | 0.0067 | IPR001680 |
| SMART | SM00320 | WD40_4 | 415 | 452 | 0.23 | IPR001680 |
| SMART | SM00320 | WD40_4 | 170 | 207 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 459 | 510 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 325 | 363 | 2.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 415 | 452 | 0.23 | IPR001680 |
| SMART | SM00320 | WD40_4 | 283 | 322 | 3.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 170 | 207 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 208 | 246 | 0.0067 | IPR001680 |
| SMART | SM00320 | WD40_4 | 283 | 322 | 3.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 372 | 411 | 7.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 459 | 510 | 1.6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 379 | 411 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 332 | 362 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 379 | 411 | 8.887423 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 290 | 331 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 332 | 362 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 290 | 331 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 379 | 411 | 8.887423 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 379 | 411 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 290 | 325 | 10.23196 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 290 | 325 | 10.23196 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 350 | 364 | 7.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 309 | 323 | 7.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 309 | 323 | 7.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 497 | 511 | 7.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 350 | 364 | 7.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 497 | 511 | 7.8E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 68 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49450.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_019424442.1 | PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Lupinus angustifolius] | 0 |
| O48716 | Protein JINGUBANG OS=Arabidopsis thaliana OX=3702 GN=JGB PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7HTK2 | WD_REPEATS_REGION domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_014105 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology