Basic Information
Locus ID:
Lb1G05547
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 374536459 | 374542870 | + | Lb1G05547 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 55,325.25 Da | 62.82 | 69.82 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 132 | 184 | 3.02248E-27 | - |
| CDD | cd09396 | LIM_DA1 | 132 | 184 | 3.02248E-27 | - |
| Pfam | PF12315 | Protein DA1 | 282 | 486 | 1.4E-94 | IPR022087 |
| Pfam | PF12315 | Protein DA1 | 282 | 486 | 1.4E-94 | IPR022087 |
| Pfam | PF00412 | LIM domain | 132 | 186 | 7.4E-9 | IPR001781 |
| Pfam | PF00412 | LIM domain | 132 | 186 | 7.4E-9 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 158 | 212 | 1.88E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 126 | 157 | 6.06E-6 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 158 | 212 | 1.88E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 126 | 157 | 6.06E-6 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 127 | 191 | 1.3E-14 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 127 | 191 | 1.3E-14 | - |
| SMART | SM00726 | uim | 73 | 92 | 0.53 | IPR003903 |
| SMART | SM00726 | uim | 42 | 61 | 0.011 | IPR003903 |
| SMART | SM00132 | lim_4 | 131 | 183 | 1.1E-12 | IPR001781 |
| SMART | SM00726 | uim | 73 | 92 | 0.53 | IPR003903 |
| SMART | SM00132 | lim_4 | 131 | 183 | 1.1E-12 | IPR001781 |
| SMART | SM00726 | uim | 42 | 61 | 0.011 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 130 | 190 | 11.899899 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 130 | 190 | 11.899899 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 42 | 61 | 10.740128 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 73 | 92 | 8.774517 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 42 | 61 | 10.740128 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 73 | 92 | 8.774517 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 132 | 166 | - | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 132 | 166 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 46 | - | - |
| Coils | Coil | Coil | 65 | 85 | - | - |
| Coils | Coil | Coil | 65 | 85 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19270.1 | DA1. | 0 |
| RefSeq | XP_026394295.1 | protein DA1-related 1-like [Papaver somniferum] | 0 |
| P0C7Q8 | Protein DA1 OS=Arabidopsis thaliana OX=3702 GN=DA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZA37 | LIM zinc-binding domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology