Basic Information
Locus ID:
Lb1G05291
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 366589580 | 366593339 | + | Lb1G05291 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 71,286.80 Da | 39.85 | 102.66 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 270 | 312 | 1.4607E-25 | - |
| CDD | cd16664 | RING-Ubox_PUB | 270 | 312 | 1.4607E-25 | - |
| Pfam | PF04564 | U-box domain | 266 | 336 | 1.4E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 395 | 432 | 2.3E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 434 | 473 | 1.7E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 395 | 432 | 2.3E-10 | IPR000225 |
| Pfam | PF04564 | U-box domain | 266 | 336 | 1.4E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 434 | 473 | 1.7E-4 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 363 | 637 | 1.12E-46 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 265 | 341 | 8.16E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 363 | 637 | 1.12E-46 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 265 | 341 | 8.16E-30 | - |
| Gene3D | G3DSA:1.20.930.20 | - | 11 | 139 | 1.2E-5 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 353 | 640 | 2.4E-50 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 266 | 339 | 8.0E-30 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 11 | 139 | 1.2E-5 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 266 | 339 | 8.0E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 353 | 640 | 2.4E-50 | IPR011989 |
| SMART | SM00185 | arm_5 | 475 | 515 | 5.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 557 | 597 | 330.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 356 | 391 | 400.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 434 | 474 | 0.0073 | IPR000225 |
| SMART | SM00185 | arm_5 | 393 | 433 | 1.4E-4 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 269 | 332 | 1.5E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 434 | 474 | 0.0073 | IPR000225 |
| SMART | SM00185 | arm_5 | 475 | 515 | 5.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 356 | 391 | 400.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 557 | 597 | 330.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 269 | 332 | 1.5E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 393 | 433 | 1.4E-4 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 445 | 487 | 9.4674 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 404 | 446 | 14.962399 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 265 | 339 | 42.62035 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 265 | 339 | 42.62035 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 445 | 487 | 9.4674 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 404 | 446 | 14.962399 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_010666679.2 | U-box domain-containing protein 14 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B407 | RING-type E3 ubiquitin transferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_003780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology