Basic Information
Locus ID:
Lb1G05018
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 358078235 | 358081442 | + | Lb1G05018 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 59,949.21 Da | 37.70 | 73.39 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 408 | 527 | 1.2E-37 | IPR032867 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 408 | 527 | 1.2E-37 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 245 | 273 | 1.7E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 213 | 242 | 1.7E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 245 | 273 | 1.7E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 213 | 242 | 1.7E-4 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 143 | 307 | 7.9E-28 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 143 | 307 | 7.9E-28 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 214 | 242 | 2.0E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 245 | 277 | 1.3E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 245 | 277 | 1.3E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 214 | 242 | 2.0E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 242 | 276 | 10.961357 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 242 | 276 | 10.961357 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 211 | 241 | 9.514466 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 211 | 241 | 9.514466 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25580.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_034684441.1 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial [Vitis riparia] | 0 |
| Q680H3 | Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H75 PE=2 SV=2 | 0 | |
| TrEMBL | F6H3U1 | DYW_deaminase domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_04s0008g05070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology