halophFGD

Basic Information

Locus ID: Lb1G05004

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Short Name: EBF2

Description: EIN3-binding F-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr01	357282319	357286012	-	Lb1G05004

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.66	67,526.66 Da	43.04	107.16	0.24

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13516	Leucine Rich repeat	332	353	0.44	IPR001611
Pfam	PF13516	Leucine Rich repeat	251	273	1.1	IPR001611
Pfam	PF13516	Leucine Rich repeat	467	489	0.027	IPR001611
Pfam	PF00560	Leucine Rich Repeat	201	218	1.1	IPR001611
Pfam	PF00646	F-box domain	67	106	8.5E-5	IPR001810
Pfam	PF13516	Leucine Rich repeat	332	353	0.44	IPR001611
Pfam	PF00560	Leucine Rich Repeat	201	218	1.1	IPR001611
Pfam	PF00646	F-box domain	67	106	8.5E-5	IPR001810
Pfam	PF13516	Leucine Rich repeat	251	273	1.1	IPR001611
Pfam	PF13516	Leucine Rich repeat	467	489	0.027	IPR001611
SUPERFAMILY	SSF52047	RNI-like	164	403	7.85E-35	-
SUPERFAMILY	SSF52047	RNI-like	330	579	5.49E-32	-
SUPERFAMILY	SSF81383	F-box domain	61	101	9.03E-7	IPR036047
SUPERFAMILY	SSF52047	RNI-like	330	579	5.49E-32	-
SUPERFAMILY	SSF81383	F-box domain	61	101	9.03E-7	IPR036047
SUPERFAMILY	SSF52047	RNI-like	164	403	7.85E-35	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	279	438	1.1E-21	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	546	631	8.7E-11	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	439	545	5.0E-16	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	57	278	3.4E-32	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	279	438	1.1E-21	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	439	545	5.0E-16	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	57	278	3.4E-32	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	546	631	8.7E-11	IPR032675
SMART	SM00367	LRR_CC_2	521	546	5.6	IPR006553
SMART	SM00367	LRR_CC_2	494	519	180.0	IPR006553
SMART	SM00367	LRR_CC_2	173	198	0.0026	IPR006553
SMART	SM00367	LRR_CC_2	547	571	63.0	IPR006553
SMART	SM00367	LRR_CC_2	199	224	6.8E-7	IPR006553
SMART	SM00367	LRR_CC_2	251	276	0.0036	IPR006553
SMART	SM00367	LRR_CC_2	357	383	7.6	IPR006553
SMART	SM00367	LRR_CC_2	574	602	150.0	IPR006553
SMART	SM00367	LRR_CC_2	384	409	36.0	IPR006553
SMART	SM00367	LRR_CC_2	441	466	130.0	IPR006553
SMART	SM00367	LRR_CC_2	225	250	0.073	IPR006553
SMART	SM00367	LRR_CC_2	331	356	0.0079	IPR006553
SMART	SM00367	LRR_CC_2	467	492	0.0064	IPR006553
SMART	SM00367	LRR_CC_2	574	602	150.0	IPR006553
SMART	SM00367	LRR_CC_2	331	356	0.0079	IPR006553
SMART	SM00367	LRR_CC_2	441	466	130.0	IPR006553
SMART	SM00367	LRR_CC_2	225	250	0.073	IPR006553
SMART	SM00367	LRR_CC_2	547	571	63.0	IPR006553
SMART	SM00367	LRR_CC_2	251	276	0.0036	IPR006553
SMART	SM00367	LRR_CC_2	357	383	7.6	IPR006553
SMART	SM00256	fbox_2	67	108	5.4E-5	IPR001810
SMART	SM00367	LRR_CC_2	384	409	36.0	IPR006553
SMART	SM00367	LRR_CC_2	494	519	180.0	IPR006553
SMART	SM00367	LRR_CC_2	521	546	5.6	IPR006553
SMART	SM00367	LRR_CC_2	173	198	0.0026	IPR006553
SMART	SM00256	fbox_2	67	108	5.4E-5	IPR001810
SMART	SM00367	LRR_CC_2	199	224	6.8E-7	IPR006553
SMART	SM00367	LRR_CC_2	467	492	0.0064	IPR006553

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14515 (EIN3-binding F-box protein)

Pathway:

ko04016 (MAPK signaling pathway - plant) map04016 (MAPK signaling pathway - plant) ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G25490.1	EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3.
RefSeq	XP_010048202.3	EIN3-binding F-box protein 1 [Eucalyptus grandis]
Swiss-Prot	Q9SKK0	EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1
TrEMBL	A0A7C9ENK7	F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg24007, jg33058, jg36593
Aizoaceae	Mesembryanthemum crystallinum	2	gene_17874, gene_8979
Amaranthaceae	Atriplex hortensis	2	Ah014340, Ah034703
Amaranthaceae	Beta vulgaris	2	BVRB_2g030340, BVRB_8g194340
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg21823, Sbi_jg29477, Sbi_jg40694, Sbi_jg50696
Amaranthaceae	Salicornia europaea	2	Seu_jg15927, Seu_jg2257
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00007971, GOSA_00008548
Amaranthaceae	Suaeda glauca	5	Sgl42031, Sgl46799, Sgl63223, Sgl63358, Sgl67835
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000011300, gene:ENSEOMG00000020443 ... gene:ENSEOMG00000020477, gene:ENSEOMG00000032375, gene:ENSEOMG00000045153, gene:ENSEOMG00000051175
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1BG0021210, CQ.Regalona.r1.2AG0022960 ... CQ.Regalona.r1.8AG0022020, CQ.Regalona.r1.8BG0020440
Anacardiaceae	Pistacia vera	2	pistato.v30250040, pistato.v30255080
Apiaceae	Apium graveolens	3	Ag11G04431, Ag2G02841, AgUnG00124
Arecaceae	Cocos nucifera	3	scaffold001805G000010, scaffold017325G000020 ... scaffold020226G000030
Arecaceae	Phoenix dactylifera	4	gene-LOC103708741, gene-LOC103718531, gene-LOC103718532 ... gene-LOC120104346
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.2480.V1.1, AsparagusV1_06.1136.V1.1 ... AsparagusV1_08.376.V1.1, AsparagusV1_08.39.V1.1
Asteraceae	Flaveria trinervia	5	Ftri12G19687, Ftri16G13372, Ftri4G00613, Ftri7G24989 ... Ftri8G04757
Brassicaceae	Arabidopsis thaliana	2	AT2G25490.1, AT5G25350.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000087m.g.v1.0, Thhalv10003828m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g22190.v2.2, Sp4g04780.v2.2
Brassicaceae	Brassica nigra	3	BniB01g017910.2N, BniB02g077920.2N, BniB07g039790.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G2341, Ceq06G0617
Casuarinaceae	Casuarina glauca	2	Cgl04G2546, Cgl06G0638
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno12g04440, gene.Cymno16g04810
Hydrocharitaceae	Thalassia testudinum	6	gene.Thate02g32510, gene.Thate05g07990, gene.Thate06g14960 ... gene.Thate07g03140, gene.Thate08g16860, gene.Thate08g18850
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-294
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG07.1447, evm.TU.LG07.952
Plantaginaceae	Plantago ovata	2	Pov_00005499, Pov_00013313
Plumbaginaceae	Limonium bicolor	2	Lb1G05004, Lb2G10819
Poaceae	Echinochloa crus-galli	8	AH02.2462, AH06.2242, AH07.742, AH07.745, BH07.4003 ... BH07.873, CH06.2262, CH07.630
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0105330, gene-QOZ80_2BG0158800 ... gene-QOZ80_6AG0544470, gene-QOZ80_6BG0498020
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.5HG0420350.1, HORVU.MOREX.r3.6HG0578570.1 ... HORVU.MOREX.r3.5HG0449420.1.CDS1, HORVU.MOREX.r3.7HG0720010.1
Poaceae	Lolium multiflorum	2	gene-QYE76_021381, gene-QYE76_034987
Poaceae	Oryza coarctata	4	Oco03G004650, Oco04G005250, Oco11G012660, Oco12G012610
Poaceae	Oryza sativa	2	LOC_Os02g10700.1, LOC_Os06g40360.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G077100, gene-BS78_10G185700
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0202104, Pt_Chr0400680, Pt_Chr0400687
Poaceae	Sporobolus alterniflorus	8	Chr02G029890, Chr05G007600, Chr06G032980, Chr0G008000 ... Chr10G017660, Chr11G004960, Chr15G024340, Chr19G015340
Poaceae	Thinopyrum elongatum	2	Tel6E01G360300, Tel7E01G639600
Poaceae	Triticum dicoccoides	4	gene_TRIDC6AG026390, gene_TRIDC6BG032450 ... gene_TRIDC7AG052690, gene_TRIDC7BG045140
Poaceae	Triticum aestivum	6	TraesCS6A02G181900.1, TraesCS6B02G210700.1 ... TraesCS6D02G169200.1, TraesCS7A02G377500.1, TraesCS7B02G278800.1, TraesCS7D02G373800.1
Poaceae	Zea mays	8	Zm00001eb011850_P001, Zm00001eb205780_P001 ... Zm00001eb235810_P001, Zm00001eb276590_P001, Zm00001eb280260_P001, Zm00001eb335950_P001, Zm00001eb336510_P001, Zm00001eb386390_P001
Poaceae	Zoysia japonica	3	nbis-gene-10076, nbis-gene-33454, nbis-gene-44057
Poaceae	Zoysia macrostachya	3	Zma_g12401, Zma_g15148, Zma_g30791
Portulacaceae	Portulaca oleracea	4	evm.TU.LG03.2502, evm.TU.LG17.1546, evm.TU.LG18.628 ... evm.TU.LG26.399
Posidoniaceae	Posidonia oceanica	4	gene.Posoc03g25410, gene.Posoc06g12820, gene.Posoc06g15890 ... gene.Posoc09g03290
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.45, evm.TU.Scaffold_10_RagTag.855 ... evm.TU.Scaffold_4_RagTag.2307
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-12863, nbisL1-mrna-13627, nbisL1-mrna-25134
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10510, nbisL1-mrna-13086, nbisL1-mrna-21320
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-16484, nbisL1-mrna-5052, nbisL1-mrna-9100
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.168, evm.TU.utg000008l.1356 ... evm.TU.utg000033l.28
Rhizophoraceae	Kandelia obovata	2	Maker00004106, Maker00015138
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-16745, nbisL1-mrna-1827, nbisL1-mrna-3776
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-14449, nbisL1-mrna-22339, nbisL1-mrna-7863
Salicaceae	Populus euphratica	5	populus_peu04763, populus_peu05766, populus_peu11131 ... populus_peu11132, populus_peu12895
Solanaceae	Lycium barbarum	4	gene-LOC132603175, gene-LOC132636210, gene-LOC132636978 ... gene-LOC132639907
Solanaceae	Solanum chilense	6	SOLCI001305600, SOLCI001549400, SOLCI001894000 ... SOLCI002671600, SOLCI004885100, SOLCI006169900
Solanaceae	Solanum pennellii	5	gene-LOC107007158, gene-LOC107022316, gene-LOC107022317 ... gene-LOC107025983, gene-LOC107028410
Tamaricaceae	Reaumuria soongarica	3	STRG.32919_chr09_+, STRG.956_chr01_-, gene_8971
Tamaricaceae	Tamarix chinensis	2	TC01G1514, TC10G1323
Zosteraceae	Zostera marina	1	Zosma01g07670.v3.1