Basic Information
Locus ID:
Lb1G04962
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 356087815 | 356091974 | + | Lb1G04962 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 43,363.68 Da | 44.77 | 92.14 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 47 | 99 | 1.4E-7 | IPR027370 |
| Pfam | PF13445 | RING-type zinc-finger | 47 | 99 | 1.4E-7 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 42 | 104 | 1.13E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 42 | 104 | 1.13E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 35 | 138 | 8.5E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 35 | 138 | 8.5E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 47 | 102 | 10.114045 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 47 | 102 | 10.114045 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 66 | 75 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 66 | 75 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021592763.1 | uncharacterized protein LOC110600263 [Manihot esculenta] | 0 |
| TrEMBL | A0A2C9UJZ0 | RING-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_14G083000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology