halophFGD

Basic Information

Locus ID: Lb1G04591

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Belongs to the glycosyl hydrolase 17 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr01	342587020	342593406	-	Lb1G04591

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.96	54,669.68 Da	48.52	81.08	-0.06

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00332	Glycosyl hydrolases family 17	37	356	4.3E-75	IPR000490
Pfam	PF07983	X8 domain	374	445	3.5E-18	IPR012946
Pfam	PF00332	Glycosyl hydrolases family 17	37	356	4.3E-75	IPR000490
Pfam	PF07983	X8 domain	374	445	3.5E-18	IPR012946
SUPERFAMILY	SSF51445	(Trans)glycosidases	38	357	4.69E-77	IPR017853
SUPERFAMILY	SSF51445	(Trans)glycosidases	38	357	4.69E-77	IPR017853
Gene3D	G3DSA:1.20.58.1040	-	370	459	2.4E-9	-
Gene3D	G3DSA:1.20.58.1040	-	370	459	2.4E-9	-
Gene3D	G3DSA:3.20.20.80	Glycosidases	36	363	3.3E-111	-
Gene3D	G3DSA:3.20.20.80	Glycosidases	36	363	3.3E-111	-
SMART	SM00768	X8_cls	373	458	9.1E-43	IPR012946
SMART	SM00768	X8_cls	373	458	9.1E-43	IPR012946
ProSitePatterns	PS00587	Glycosyl hydrolases family 17 signature.	271	284	-	IPR000490
ProSitePatterns	PS00587	Glycosyl hydrolases family 17 signature.	271	284	-	IPR000490

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds)

KEGG Pathway

KO Term:

K19892 (glucan endo-1,3-beta-glucosidase 4 [EC:3.2.1.39])

Pathway:

ko00500 (Starch and sucrose metabolism) map00500 (Starch and sucrose metabolism)

Reaction:

R00308 (1,3-beta-D-Glucan + H2O <=> D-Glucose + 1,3-beta-D-Glucan)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G13560.1	O-Glycosyl hydrolases family 17 protein.
RefSeq	XP_021771931.1	glucan endo-1,3-beta-glucosidase 4-like [Chenopodium quinoa]
Swiss-Prot	Q94CD8	Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 PE=2 SV=1
TrEMBL	A0A0K9RV46	X8 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_032040 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg1626, jg20017, jg20432, jg21868, jg29047, jg29822, jg5146 ... jg7356
Aizoaceae	Mesembryanthemum crystallinum	4	gene_10534, gene_17422, gene_18735, gene_87
Amaranthaceae	Atriplex hortensis	4	Ah004855, Ah015602, Ah017509, Ah033303
Amaranthaceae	Beta vulgaris	4	BVRB_2g039230, BVRB_4g071160, BVRB_6g144440, BVRB_8g185980
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg18064, Sbi_jg19496, Sbi_jg40164, Sbi_jg41965 ... Sbi_jg44051, Sbi_jg48172, Sbi_jg50118, Sbi_jg62691
Amaranthaceae	Salicornia europaea	4	Seu_jg1294, Seu_jg1743, Seu_jg17900, Seu_jg27516
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00011340, GOSA_00014337, GOSA_00015231, GOSA_00025173
Amaranthaceae	Suaeda glauca	8	Sgl23798, Sgl28963, Sgl42758, Sgl46333, Sgl47523, Sgl51048 ... Sgl64256, Sgl68706
Amaranthaceae	Chenopodium album	11	gene:ENSEOMG00000000862, gene:ENSEOMG00000003410 ... gene:ENSEOMG00000009154, gene:ENSEOMG00000011694, gene:ENSEOMG00000015750, gene:ENSEOMG00000017245, gene:ENSEOMG00000027155, gene:ENSEOMG00000028401, gene:ENSEOMG00000042344, gene:ENSEOMG00000045138, gene:ENSEOMG00000051434
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.2AG0007810, CQ.Regalona.r1.2BG0009180 ... CQ.Regalona.r1.4AG0000270, CQ.Regalona.r1.4BG0000310, CQ.Regalona.r1.6AG0012760, CQ.Regalona.r1.6AG0012770, CQ.Regalona.r1.6BG0012730, CQ.Regalona.r1.8AG0001580, CQ.Regalona.r1.8BG0001510
Anacardiaceae	Pistacia vera	6	pistato.v30050370, pistato.v30086050, pistato.v30190240 ... pistato.v30196800, pistato.v30218030, pistato.v30282550
Apiaceae	Apium graveolens	4	Ag1G01666, Ag7G00593, Ag7G01762, Ag9G01380
Arecaceae	Cocos nucifera	6	COCNU_02G005250, COCNU_06G011950, COCNU_06G014140 ... scaffold001699G000020, scaffold003371G000020, scaffold015002G000020
Arecaceae	Phoenix dactylifera	6	gene-LOC103695690, gene-LOC103697069, gene-LOC103706713 ... gene-LOC103707195, gene-LOC103716286, gene-LOC103719148
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.1553.V1.1, AsparagusV1_07.3874.V1.1
Asteraceae	Flaveria trinervia	8	Ftri11G17022, Ftri12G08386, Ftri15G13201, Ftri16G05516 ... Ftri17G24019, Ftri2G00626, Ftri5G27873, Ftri9G20072
Brassicaceae	Arabidopsis thaliana	4	AT1G11820.2, AT1G66250.1, AT2G01630.1, AT3G13560.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10004013m.g.v1.0, Thhalv10006713m.g.v1.0 ... Thhalv10018427m.g.v1.0, Thhalv10020572m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g10440.v2.2, Sp2g13080.v2.2, Sp3g11770.v2.2 ... Sp5g21310.v2.2
Brassicaceae	Brassica nigra	5	BniB01g051640.2N, BniB02g006570.2N, BniB03g004690.2N ... BniB04g009530.2N, BniB05g062210.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq04G1617, Ceq05G2344, Ceq08G0631, Ceq09G0833
Casuarinaceae	Casuarina glauca	4	Cgl04G1795, Cgl05G2501, Cgl08G0604, Cgl09G0905
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g02400, gene.Cymno09g06340, gene.Cymno11g08330 ... gene.Cymno13g01620
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g37310, gene.Thate05g22130, gene.Thate05g23890
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-2637, nbisL1-mrna-3538, nbisL1-mrna-7704 ... nbisL1-mrna-9890
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG02.614, evm.TU.LG03.1294, evm.TU.LG09.404 ... evm.TU.LG12.1142
Plantaginaceae	Plantago ovata	4	Pov_00005938, Pov_00017476, Pov_00026349, Pov_00026870
Plumbaginaceae	Limonium bicolor	5	Lb1G04591, Lb2G13159, Lb4G22959, Lb6G31063, Lb7G33226
Poaceae	Echinochloa crus-galli	7	AH01.4495, AH02.3825, AH03.3126, AH03.3478, BH07.4146 ... CH01.5113, Contig192.133
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_3AG0239170, gene-QOZ80_3BG0288820 ... gene-QOZ80_7AG0568740, gene-QOZ80_7AG0574230, gene-QOZ80_7BG0600130, gene-QOZ80_7BG0605510
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0131600.1, HORVU.MOREX.r3.2HG0141980.1 ... HORVU.MOREX.r3.4HG0395910.1, HORVU.MOREX.r3.5HG0466440.1
Poaceae	Lolium multiflorum	6	gene-QYE76_017013, gene-QYE76_040115, gene-QYE76_040612 ... gene-QYE76_041064, gene-QYE76_041144, gene-QYE76_069720
Poaceae	Oryza coarctata	6	Oco05G006760, Oco06G006950, Oco13G008330, Oco13G010840 ... Oco14G008810, Oco14G011580
Poaceae	Oryza sativa	4	LOC_Os03g12140.1, LOC_Os07g32600.1, LOC_Os07g38930.5 ... LOC_Os08g14390.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G434800, gene-BS78_02G289900 ... gene-BS78_02G326000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0101797, Pt_Chr0104181, Pt_Chr0304607, Pt_Chr0405476
Poaceae	Sporobolus alterniflorus	6	Chr01G027610, Chr12G011770, Chr19G003670, Chr24G008300 ... Chr27G013600, Chr28G007620
Poaceae	Thinopyrum elongatum	4	Tel2E01G371100, Tel2E01G418500, Tel4E01G414300 ... Tel5E01G268700
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG023810, gene_TRIDC2AG030070 ... gene_TRIDC2BG029320, gene_TRIDC2BG033800, gene_TRIDC4AG008610, gene_TRIDC4BG042450, gene_TRIDC5AG025880, gene_TRIDC5BG026990
Poaceae	Triticum aestivum	12	TraesCS2A02G186900.1, TraesCS2A02G224900.1 ... TraesCS2B02G220300.1, TraesCS2B02G274900.1, TraesCS2D02G201000.1, TraesCS2D02G230900.1, TraesCS4A02G064900.2, TraesCS4B02G242300.1, TraesCS4D02G241900.1, TraesCS5A02G155600.1, TraesCS5B02G153900.1, TraesCS5D02G160700.1
Poaceae	Zea mays	5	Zm00001eb008930_P001, Zm00001eb107530_P001 ... Zm00001eb322450_P005, Zm00001eb325370_P001, Zm00001eb399910_P002
Poaceae	Zoysia japonica	1	nbis-gene-608
Poaceae	Zoysia macrostachya	4	Zma_g1761, Zma_g5417, Zma_g6503, Zma_g6709
Portulacaceae	Portulaca oleracea	14	evm.TU.LG01.1894, evm.TU.LG05.1267, evm.TU.LG06.1175 ... evm.TU.LG11.522, evm.TU.LG13.870, evm.TU.LG14.1081, evm.TU.LG18.1112, evm.TU.LG18.1113, evm.TU.LG18.885, evm.TU.LG20.758, evm.TU.LG20.760, evm.TU.LG20.982, evm.TU.LG21.538, evm.TU.LG25.96
Posidoniaceae	Posidonia oceanica	4	gene.Posoc03g04640, gene.Posoc04g09170, gene.Posoc08g00370 ... gene.Posoc10g03760
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_12_RagTag.1008, evm.TU.Scaffold_3_RagTag.762 ... evm.TU.Scaffold_15_RagTag.223, evm.TU.Scaffold_17_RagTag.777, evm.TU.Scaffold_7_RagTag.1748
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-1196, nbisL1-mrna-19782, nbisL1-mrna-23489 ... nbisL1-mrna-23959, nbisL1-mrna-26452
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-12316, nbisL1-mrna-17333, nbisL1-mrna-17889 ... nbisL1-mrna-20571, nbisL1-mrna-6354, nbisL1-mrna-9106
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-17548, nbisL1-mrna-20040, nbisL1-mrna-21710 ... nbisL1-mrna-6440
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000001l.141, evm.TU.utg000002l.21 ... evm.TU.utg000013l.428, evm.TU.utg000019l.749, evm.TU.utg000027l.28
Rhizophoraceae	Kandelia obovata	5	Maker00004541, Maker00004658, Maker00012127, Maker00012716 ... Maker00017440
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-10712, nbisL1-mrna-10823, nbisL1-mrna-11584 ... nbisL1-mrna-5214, nbisL1-mrna-5818
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-12428, nbisL1-mrna-13200, nbisL1-mrna-14262 ... nbisL1-mrna-23282, nbisL1-mrna-2721
Salicaceae	Populus euphratica	7	populus_peu04446, populus_peu09668, populus_peu10360 ... populus_peu18472, populus_peu21192, populus_peu24858, populus_peu35264
Solanaceae	Lycium barbarum	5	gene-LOC132614704, gene-LOC132615184, gene-LOC132625120 ... gene-LOC132626062, gene-LOC132640814
Solanaceae	Solanum chilense	4	SOLCI002550200, SOLCI003965200, SOLCI004136200 ... SOLCI005204300
Solanaceae	Solanum pennellii	4	gene-LOC107008136, gene-LOC107011211, gene-LOC107018050 ... gene-LOC107029045
Tamaricaceae	Reaumuria soongarica	6	STRG.27114_chr04_+, STRG.27115_chr04_+, STRG.28767_chr04_- ... STRG.7338_chr04_-, gene_10205, gene_2441
Tamaricaceae	Tamarix chinensis	5	TC01G2211, TC02G2154, TC04G0106, TC06G2579, TC08G0093
Zosteraceae	Zostera marina	4	Zosma03g23050.v3.1, Zosma03g35630.v3.1, Zosma06g10410.v3.1 ... Zosma06g23210.v3.1