Basic Information
Locus ID:
Lb1G04439
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
SOC1
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 337401948 | 337406156 | + | Lb1G04439 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 27,086.42 Da | 60.71 | 81.44 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 72 | 1.63137E-42 | IPR033896 |
| CDD | cd00265 | MADS_MEF2_like | 3 | 72 | 1.63137E-42 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 3.2E-26 | IPR002100 |
| Pfam | PF01486 | K-box region | 94 | 180 | 1.7E-23 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 3.2E-26 | IPR002100 |
| Pfam | PF01486 | K-box region | 94 | 180 | 1.7E-23 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 77 | 8.11E-32 | IPR036879 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 77 | 8.11E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 95 | 1.3E-28 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 95 | 1.3E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 6.8E-41 | IPR002100 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 6.8E-41 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 97 | 187 | 13.846169 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 32.46389 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 32.46389 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 97 | 187 | 13.846169 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 3.3E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 3.3E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 3.3E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 3.3E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 3.3E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 3.3E-31 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 220 | - | - |
| Coils | Coil | Coil | 153 | 180 | - | - |
| Coils | Coil | Coil | 153 | 180 | - | - |
| Coils | Coil | Coil | 66 | 110 | - | - |
| Coils | Coil | Coil | 66 | 110 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62165.1 | AGAMOUS-like 42. Encodes a MADS box transcription factor. Expressed in quiescent center. | 0 |
| RefSeq | XP_016447855.1 | PREDICTED: MADS-box protein AGL42-like [Nicotiana tabacum] | 0 |
| Q9FIS1 | MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S3Y6T8 | MADS-box protein AGL42-like OS=Nicotiana tabacum OX=4097 GN=LOC107772910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology