halophFGD

Basic Information

Locus ID: Lb1G04438

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr01	337376439	337381939	+	Lb1G04438

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.12	43,523.67 Da	43.29	75.42	-0.32

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00693	secretory_peroxidase	98	392	1.60632E-166	IPR033905
CDD	cd00693	secretory_peroxidase	98	392	1.60632E-166	IPR033905
Pfam	PF00141	Peroxidase	3	70	9.2E-11	IPR002016
Pfam	PF00141	Peroxidase	121	359	1.2E-71	IPR002016
Pfam	PF00141	Peroxidase	121	359	1.2E-71	IPR002016
Pfam	PF00141	Peroxidase	3	70	9.2E-11	IPR002016
SUPERFAMILY	SSF48113	Heme-dependent peroxidases	98	393	4.57E-101	IPR010255
SUPERFAMILY	SSF48113	Heme-dependent peroxidases	98	393	4.57E-101	IPR010255
SUPERFAMILY	SSF48113	Heme-dependent peroxidases	2	90	7.22E-23	IPR010255
SUPERFAMILY	SSF48113	Heme-dependent peroxidases	2	90	7.22E-23	IPR010255
Gene3D	G3DSA:1.10.420.10	Peroxidase, domain 2	1	85	4.3E-22	-
Gene3D	G3DSA:1.10.420.10	Peroxidase, domain 2	233	374	3.5E-113	-
Gene3D	G3DSA:1.10.420.10	Peroxidase, domain 2	1	85	4.3E-22	-
Gene3D	G3DSA:1.10.520.10	-	101	393	3.5E-113	-
Gene3D	G3DSA:1.10.420.10	Peroxidase, domain 2	233	374	3.5E-113	-
Gene3D	G3DSA:1.10.520.10	-	101	393	3.5E-113	-
ProSiteProfiles	PS50873	Plant heme peroxidase family profile.	97	393	73.919106	IPR002016
ProSiteProfiles	PS50873	Plant heme peroxidase family profile.	1	104	17.042324	IPR002016
ProSiteProfiles	PS50873	Plant heme peroxidase family profile.	97	393	73.919106	IPR002016
ProSiteProfiles	PS50873	Plant heme peroxidase family profile.	1	104	17.042324	IPR002016
ProSitePatterns	PS00435	Peroxidases proximal heme-ligand signature.	255	265	-	IPR019793
ProSitePatterns	PS00435	Peroxidases proximal heme-ligand signature.	255	265	-	IPR019793
PRINTS	PR00461	Plant peroxidase signature	254	266	9.9E-50	IPR000823
PRINTS	PR00461	Plant peroxidase signature	369	382	9.9E-50	IPR000823
PRINTS	PR00461	Plant peroxidase signature	170	183	9.9E-50	IPR000823
PRINTS	PR00458	Haem peroxidase superfamily signature	190	207	6.1E-27	IPR002016
PRINTS	PR00461	Plant peroxidase signature	189	199	9.9E-50	IPR000823
PRINTS	PR00461	Plant peroxidase signature	313	328	9.9E-50	IPR000823
PRINTS	PR00458	Haem peroxidase superfamily signature	315	330	6.1E-27	IPR002016
PRINTS	PR00458	Haem peroxidase superfamily signature	129	143	6.1E-27	IPR002016
PRINTS	PR00458	Haem peroxidase superfamily signature	255	270	6.1E-27	IPR002016
PRINTS	PR00461	Plant peroxidase signature	131	151	9.9E-50	IPR000823
PRINTS	PR00461	Plant peroxidase signature	208	223	9.9E-50	IPR000823
PRINTS	PR00461	Plant peroxidase signature	329	346	9.9E-50	IPR000823
PRINTS	PR00458	Haem peroxidase superfamily signature	208	220	6.1E-27	IPR002016
PRINTS	PR00458	Haem peroxidase superfamily signature	129	143	6.1E-27	IPR002016
PRINTS	PR00461	Plant peroxidase signature	313	328	9.9E-50	IPR000823
PRINTS	PR00461	Plant peroxidase signature	170	183	9.9E-50	IPR000823
PRINTS	PR00461	Plant peroxidase signature	254	266	9.9E-50	IPR000823
PRINTS	PR00461	Plant peroxidase signature	369	382	9.9E-50	IPR000823
PRINTS	PR00461	Plant peroxidase signature	208	223	9.9E-50	IPR000823
PRINTS	PR00461	Plant peroxidase signature	131	151	9.9E-50	IPR000823
PRINTS	PR00461	Plant peroxidase signature	329	346	9.9E-50	IPR000823
PRINTS	PR00461	Plant peroxidase signature	107	126	9.9E-50	IPR000823
PRINTS	PR00458	Haem peroxidase superfamily signature	255	270	6.1E-27	IPR002016
PRINTS	PR00461	Plant peroxidase signature	189	199	9.9E-50	IPR000823
PRINTS	PR00458	Haem peroxidase superfamily signature	208	220	6.1E-27	IPR002016
PRINTS	PR00458	Haem peroxidase superfamily signature	315	330	6.1E-27	IPR002016
PRINTS	PR00458	Haem peroxidase superfamily signature	190	207	6.1E-27	IPR002016
PRINTS	PR00461	Plant peroxidase signature	107	126	9.9E-50	IPR000823

Gene Ontology

Biological Process:

GO:0006979 (response to oxidative stress) GO:0042744 (hydrogen peroxide catabolic process)

Molecular Function:

GO:0004601 (peroxidase activity) GO:0020037 (heme binding)

KEGG Pathway

KO Term:

K00430 (peroxidase [EC:1.11.1.7])

Pathway:

ko00940 (Phenylpropanoid biosynthesis) map00940 (Phenylpropanoid biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Reaction:

R00602 (Methanol + Hydrogen peroxide <=> Formaldehyde + 2 H2O) R02596 (Coniferyl alcohol <=> Guaiacyl lignin) R03919 (Sinapyl alcohol <=> Syringyl lignin) R04007 (4-Coumaryl alcohol <=> p-Hydroxyphenyl lignin) R07443 (5-Hydroxyconiferyl alcohol <=> 5-Hydroxy-guaiacyl lignin)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G51890.1	Peroxidase superfamily protein. encodes peroxidase involved in the lignification of tracheary elements (TE) in roots
RefSeq	XP_040963647.1	peroxidase 66-like [Gossypium hirsutum]
Swiss-Prot	Q9LT91	Peroxidase 66 OS=Arabidopsis thaliana OX=3702 GN=PER66 PE=2 SV=1
TrEMBL	A0A5J5P4I5	Peroxidase OS=Gossypium barbadense OX=3634 GN=ES319_D12G289800v1 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10151, jg32987, jg34007, jg6374
Aizoaceae	Mesembryanthemum crystallinum	3	gene_16856, gene_3165, gene_3166
Amaranthaceae	Atriplex hortensis	4	Ah018997, Ah018999, Ah019000, Ah027228
Amaranthaceae	Beta vulgaris	1	BVRB_6g134170
Amaranthaceae	Salicornia bigelovii	13	Sbi_jg12619, Sbi_jg12620, Sbi_jg15459, Sbi_jg15462 ... Sbi_jg15463, Sbi_jg15464, Sbi_jg53322, Sbi_jg53323, Sbi_jg56267, Sbi_jg56272, Sbi_jg56273, Sbi_jg56274, Sbi_jg56282
Amaranthaceae	Salicornia europaea	5	Seu_jg26741, Seu_jg26745, Seu_jg26747, Seu_jg8598 ... Seu_jg8599
Amaranthaceae	Suaeda aralocaspica	7	GOSA_00004237, GOSA_00006617, GOSA_00006618, GOSA_00006619 ... GOSA_00010413, GOSA_00010414, GOSA_00013101
Amaranthaceae	Suaeda glauca	11	Sgl02076, Sgl02077, Sgl07229, Sgl07230, Sgl07231, Sgl12449 ... Sgl17728, Sgl33644, Sgl33645, Sgl38955, Sgl38956
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000002066, gene:ENSEOMG00000002084 ... gene:ENSEOMG00000003190, gene:ENSEOMG00000003766, gene:ENSEOMG00000027398, gene:ENSEOMG00000030232, gene:ENSEOMG00000041294, gene:ENSEOMG00000041714
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.3AG0002080, CQ.Regalona.r1.3AG0002090 ... CQ.Regalona.r1.3BG0002180, CQ.Regalona.r1.3BG0002190, CQ.Regalona.r1.3BG0002200, CQ.Regalona.r1.6AG0023300, CQ.Regalona.r1.6AG0023310, CQ.Regalona.r1.6BG0024700, CQ.Regalona.r1.6BG0024710
Anacardiaceae	Pistacia vera	3	pistato.v30049000, pistato.v30182020, pistato.v30211420
Apiaceae	Apium graveolens	2	Ag1G01147, Ag4G01841
Arecaceae	Cocos nucifera	1	COCNU_08G008930
Arecaceae	Phoenix dactylifera	2	gene-LOC103718926, gene-LOC103722765
Asparagaceae	Asparagus officinalis	1	AsparagusV1_07.2550.V1.1
Asteraceae	Flaveria trinervia	8	Ftri17G13314, Ftri18G23195, Ftri18G29385, Ftri1G12150 ... Ftri1G26928, Ftri1G29003, Ftri1G32850, FtriNA22547
Brassicaceae	Arabidopsis thaliana	2	AT5G42180.1, AT5G51890.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10014117m.g.v1.0, Thhalv10027848m.g.v1.0 ... Thhalv10028329m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp6g14150.v2.2, Sp7g08620.v2.2
Brassicaceae	Brassica nigra	4	BniB02g029390.2N, BniB02g059770.2N, BniB03g064030.2N ... BniB07g017340.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G2063, Ceq03G0838, Ceq06G0120
Casuarinaceae	Casuarina glauca	3	Cgl02G2133, Cgl03G0912, Cgl06G0132
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno09g00580
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-10448
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2224, evm.TU.LG01.2225, evm.TU.LG06.166
Plantaginaceae	Plantago ovata	4	Pov_00003474, Pov_00020632, Pov_00040888, Pov_00040890
Plumbaginaceae	Limonium bicolor	8	Lb1G04392, Lb1G04394, Lb1G04434, Lb1G04435, Lb1G04437 ... Lb1G04438, Lb1G06121, Lb8G35814
Poaceae	Echinochloa crus-galli	3	AH07.4065, CH07.3941, Contig1026.7
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_2AG0151810, gene-QOZ80_2BG0207190
Poaceae	Lolium multiflorum	2	gene-QYE76_051382, gene-QYE76_051383
Poaceae	Oryza coarctata	2	Oco03G026450, Oco04G026840
Poaceae	Oryza sativa	1	LOC_Os02g58720.2
Poaceae	Paspalum vaginatum	1	gene-BS78_04G331700
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0300074
Poaceae	Sporobolus alterniflorus	1	Chr15G000020
Poaceae	Thinopyrum elongatum	2	Tel2E01G788100, Tel3E01G003500
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG066170, gene_TRIDC2BG071340
Poaceae	Triticum aestivum	3	TraesCS2A02G467000.1.cds1, TraesCS2B02G489800.1.cds1 ... TraesCS2D02G467000.1.cds1
Poaceae	Zea mays	1	Zm00001eb240670_P002
Poaceae	Zoysia japonica	1	nbis-gene-8228
Poaceae	Zoysia macrostachya	1	Zma_g14776
Portulacaceae	Portulaca oleracea	3	evm.TU.LG03.1496, evm.TU.LG11.1576, evm.TU.LG12.158
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g09020, gene.Posoc08g05580
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_11_RagTag.1317 ... evm.TU.Scaffold_8_RagTag.1308
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12626, nbisL1-mrna-9102
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-18558, nbisL1-mrna-20477
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12894, nbisL1-mrna-15340, nbisL1-mrna-15341
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000010l.338, evm.TU.utg000018l.439
Rhizophoraceae	Kandelia obovata	2	Maker00003067, Maker00008812
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1041, nbisL1-mrna-3311
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-11157, nbisL1-mrna-20641
Salicaceae	Populus euphratica	3	populus_peu14089, populus_peu29233, populus_peu33040
Solanaceae	Lycium barbarum	8	gene-LOC132602573, gene-LOC132604169, gene-LOC132621978 ... gene-LOC132623949, gene-LOC132624040, gene-LOC132627256, gene-LOC132631131, gene-LOC132631811
Solanaceae	Solanum chilense	5	SOLCI004380800, SOLCI005347500, SOLCI006234400 ... SOLCI006234500, SOLCI006931200
Solanaceae	Solanum pennellii	5	gene-LOC107006734, gene-LOC107009520, gene-LOC107010550 ... gene-LOC107012771, gene-LOC107017275
Tamaricaceae	Reaumuria soongarica	3	gene_2500, gene_3090, gene_4120
Tamaricaceae	Tamarix chinensis	3	TC01G2471, TC05G0301, TC06G1760
Zosteraceae	Zostera marina	1	Zosma05g31120.v3.1