halophFGD

Basic Information

Locus ID: Lb1G04431

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: zinc finger CCCH domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr01	337179863	337183141	+	Lb1G04431

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.88	46,569.38 Da	36.49	75.52	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	292	326	0.0029	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	254	287	2.5E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	292	326	0.0029	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	254	287	2.5E-4	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	209	420	6.16E-37	IPR036322
SUPERFAMILY	SSF50978	WD40 repeat-like	209	420	6.16E-37	IPR036322
Gene3D	G3DSA:2.130.10.10	-	201	425	1.3E-35	IPR015943
Gene3D	G3DSA:2.130.10.10	-	201	425	1.3E-35	IPR015943
Gene3D	G3DSA:3.30.1370.210	-	10	75	8.1E-7	-
Gene3D	G3DSA:3.30.1370.210	-	10	75	8.1E-7	-
SMART	SM00320	WD40_4	331	374	17.0	IPR001680
SMART	SM00320	WD40_4	250	287	2.0E-4	IPR001680
SMART	SM00320	WD40_4	206	243	10.0	IPR001680
SMART	SM00320	WD40_4	290	327	4.5E-4	IPR001680
SMART	SM00320	WD40_4	331	374	17.0	IPR001680
SMART	SM00320	WD40_4	250	287	2.0E-4	IPR001680
SMART	SM00320	WD40_4	206	243	10.0	IPR001680
SMART	SM00320	WD40_4	377	414	30.0	IPR001680
SMART	SM00320	WD40_4	377	414	30.0	IPR001680
SMART	SM00320	WD40_4	290	327	4.5E-4	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	257	296	13.315579	IPR001680
ProSiteProfiles	PS50103	Zinc finger C3H1-type profile.	36	62	12.549097	IPR000571
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	257	290	10.179234	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	257	296	13.315579	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	257	290	10.179234	-
ProSiteProfiles	PS50103	Zinc finger C3H1-type profile.	36	62	12.549097	IPR000571
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	274	288	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	274	288	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	230	244	9.0E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	314	328	9.0E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	274	288	9.0E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	274	288	9.0E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	230	244	9.0E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	314	328	9.0E-5	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	1	36	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	17	36	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	36	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	17	36	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0046872 (metal ion binding)

KEGG Pathway

KO Term:

K10260 (F-box and WD-40 domain protein 7)

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G25440.1	zinc finger WD40 repeat protein 1.
RefSeq	XP_052185440.1	zinc finger CCCH domain-containing protein 48-like [Diospyros lotus]
Swiss-Prot	Q0DYP5	Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2
TrEMBL	A0A835D0L4	Zinc finger CCCH domain-containing protein 48-like OS=Tetracentron sinense OX=13715 GN=HHK36_028837 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10154, jg14043, jg2340, jg29301
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1388, gene_3174
Amaranthaceae	Atriplex hortensis	2	Ah018984, Ah031355
Amaranthaceae	Beta vulgaris	2	BVRB_8g191380, BVRB_8g191390
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg15485, Sbi_jg56296
Amaranthaceae	Salicornia europaea	1	Seu_jg26761
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00006608, GOSA_00008943
Amaranthaceae	Suaeda glauca	4	Sgl02069, Sgl07222, Sgl74130, Sgl77645
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000000705, gene:ENSEOMG00000004802 ... gene:ENSEOMG00000028815, gene:ENSEOMG00000040014, gene:ENSEOMG00000046367
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0002180, CQ.Regalona.r1.3BG0002300 ... CQ.Regalona.r1.7AG0021940, CQ.Regalona.r1.7BG0024510
Anacardiaceae	Pistacia vera	2	pistato.v30003610, pistato.v30182120
Apiaceae	Apium graveolens	4	Ag10G00202, Ag2G01960, Ag4G01742, Ag8G00755
Arecaceae	Cocos nucifera	2	COCNU_07G007240, scaffold000778G000030
Arecaceae	Phoenix dactylifera	1	gene-LOC103711123
Asparagaceae	Asparagus officinalis	8	AsparagusV1_01.3628.V1.1, AsparagusV1_04.2108.V1.1 ... AsparagusV1_04.2986.V1.1, AsparagusV1_04.2990.V1.1, AsparagusV1_08.2958.V1.1, AsparagusV1_09.778.V1.1, AsparagusV1_10.997.V1.1, AsparagusV1_10.998.V1.1
Asteraceae	Flaveria trinervia	4	Ftri12G31744, Ftri8G33145, Ftri9G00006, FtriNA05352
Brassicaceae	Arabidopsis thaliana	4	AT4G25440.1, AT5G40880.1, AT5G49200.1, AT5G51980.2
Brassicaceae	Eutrema salsugineum	4	Thhalv10013582m.g.v1.0, Thhalv10025269m.g.v1.0 ... Thhalv10027743m.g.v1.0, Thhalv10027745m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp6g14230.v2.2, Sp7g01600.v2.2, Sp7g23490.v2.2
Brassicaceae	Brassica nigra	8	BniB01g026530.2N, BniB01g026590.2N, BniB02g029520.2N ... BniB02g029960.2N, BniB03g040680.2N, BniB03g053290.2N, BniB05g011810.2N, BniB08g017560.2N
Casuarinaceae	Casuarina equisetifolia	16	Ceq01G1037, Ceq01G1048, Ceq01G1534, Ceq02G1793, Ceq02G2070 ... Ceq04G1031, Ceq04G1039, Ceq04G1042, Ceq04G1051, Ceq05G2127, Ceq08G1499, Ceq08G1617, Ceq08G1639, Ceq08G1643, Ceq08G1752, Ceq09G1260
Casuarinaceae	Casuarina glauca	21	Cgl01G1150, Cgl01G1209, Cgl01G1220, Cgl01G1699, Cgl02G1853 ... Cgl02G1865, Cgl02G2141, Cgl04G1117, Cgl04G1171, Cgl04G1180, Cgl05G2188, Cgl05G2190, Cgl05G2209, Cgl08G1478, Cgl08G1531, Cgl08G1656, Cgl08G1680, Cgl08G1683, Cgl08G1690, Cgl08G1788, Cgl09G1348
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno14g01870, gene.Cymno14g01880
Dunaliellaceae	Dunaliella salina	1	Dusal.0698s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g11440, gene.Thate08g03670, gene.Thate08g03720
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.2214, evm.TU.LG04.955, evm.TU.LG04.961 ... evm.TU.LG04.963, evm.TU.LG04.964
Plantaginaceae	Plantago ovata	5	Pov_00019507, Pov_00028600, Pov_00028769, Pov_00035026 ... Pov_00040895
Plumbaginaceae	Limonium bicolor	2	Lb1G04398, Lb1G04431
Poaceae	Echinochloa crus-galli	9	AH01.5287, AH02.353, AH05.3464, AH07.2993, BH02.379 ... BH07.2816, CH01.5523, CH02.418, CH07.2896
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1BG0061370, gene-QOZ80_1BG0061390 ... gene-QOZ80_2AG0140780, gene-QOZ80_2BG0196390
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0236950.1, HORVU.MOREX.r3.6HG0603760.2 ... HORVU.MOREX.r3.4HG0407530.1.CDS1
Poaceae	Lolium multiflorum	8	gene-QYE76_000717, gene-QYE76_008723, gene-QYE76_024346 ... gene-QYE76_048188, gene-QYE76_050198, gene-QYE76_050733, gene-QYE76_068993, gene-QYE76_070820
Poaceae	Oryza coarctata	6	Oco01G003770, Oco02G003840, Oco03G018100, Oco04G018850 ... Oco05G002780, Oco06G002760
Poaceae	Oryza sativa	5	LOC_Os01g09252.1, LOC_Os02g45480.1, LOC_Os03g05210.1 ... LOC_Os03g05250.1, LOC_Os04g48375.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G034600, gene-BS78_04G240500
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0100064, Pt_Chr0100084, Pt_Chr0200021, Pt_Chr0203712 ... Pt_Chr0206594, Pt_Chr0403282, Pt_Chr0405571, Pt_Chr0603331, Pt_Chr0700307
Poaceae	Sporobolus alterniflorus	7	Chr02G020610, Chr03G006120, Chr03G006130, Chr03G006140 ... Chr06G005140, Chr09G023570, Chr15G006720
Poaceae	Thinopyrum elongatum	3	Tel3E01G189800, Tel4E01G515900, Tel6E01G478600
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG013470, gene_TRIDC3BG018020 ... gene_TRIDC4AG055630, gene_TRIDC4BG052810, gene_TRIDC6AG039630, gene_TRIDC6BG046540
Poaceae	Triticum aestivum	8	TraesCS3A02G109600.1, TraesCS3D02G111400.1 ... TraesCS4A02G410400.1.cds1, TraesCS4B02G310500.1.cds1, TraesCS4D02G308400.1.cds1, TraesCS6A02G257200.1, TraesCS6B02G267900.1, TraesCS6D02G238400.3
Poaceae	Zea mays	3	Zm00001eb088450_P001, Zm00001eb121510_P001 ... Zm00001eb250580_P003
Poaceae	Zoysia japonica	5	nbis-gene-22274, nbis-gene-36001, nbis-gene-6562 ... nbis-gene-6565, nbis-gene-9161
Poaceae	Zoysia macrostachya	4	Zma_g10203, Zma_g10204, Zma_g14121, Zma_g16871
Portulacaceae	Portulaca oleracea	8	evm.TU.LG03.578, evm.TU.LG10.1251, evm.TU.LG11.1581 ... evm.TU.LG12.1152, evm.TU.LG19.1212, evm.TU.LG24.1214, evm.TU.LG25.760, evm.TU.LG26.856
Posidoniaceae	Posidonia oceanica	1	gene.Posoc06g07270
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_11_RagTag.1326, evm.TU.Scaffold_4_RagTag.173 ... evm.TU.Scaffold_14_RagTag.542, evm.TU.Scaffold_1_RagTag.1170, evm.TU.Scaffold_2_RagTag.1165
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-12632, nbisL1-mrna-17811, nbisL1-mrna-29176 ... nbisL1-mrna-6450
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-12959, nbisL1-mrna-16215, nbisL1-mrna-1726 ... nbisL1-mrna-6824
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-18829, nbisL1-mrna-2117, nbisL1-mrna-8204 ... nbisL1-mrna-8206
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000007l.38, add.evm.TU.utg000010l.145 ... evm.TU.utg000008l.104, evm.TU.utg000016l.804
Rhizophoraceae	Kandelia obovata	3	Maker00000881, Maker00009084, Maker00017327
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-1044, nbisL1-mrna-10988, nbisL1-mrna-12431 ... nbisL1-mrna-23325, nbisL1-mrna-23326, nbisL1-mrna-2383
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-10569, nbisL1-mrna-13369, nbisL1-mrna-20635 ... nbisL1-mrna-5561, nbisL1-mrna-6234
Salicaceae	Populus euphratica	4	populus_peu27762, populus_peu29225, populus_peu30584 ... populus_peu34079
Solanaceae	Lycium barbarum	1	gene-LOC132631818
Solanaceae	Solanum pennellii	1	gene-LOC107015414
Tamaricaceae	Reaumuria soongarica	3	gene_15775, gene_15850, gene_5194
Tamaricaceae	Tamarix chinensis	5	TC06G1729, TC09G2144, TC09G2145, TC09G2148, TC09G2149
Zosteraceae	Zostera marina	1	Zosma03g26430.v3.1