Basic Information
Locus ID:
Lb1G04391
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
SOC1
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 336190175 | 336198423 | - | Lb1G04391 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.11 | 22,976.78 Da | 40.84 | 90.74 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 151 | 196 | 9.7087E-32 | IPR033896 |
| CDD | cd00265 | MADS_MEF2_like | 151 | 196 | 9.7087E-32 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 158 | 199 | 4.0E-22 | IPR002100 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 158 | 199 | 4.0E-22 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 149 | 197 | 3.92E-23 | IPR036879 |
| SUPERFAMILY | SSF55455 | SRF-like | 149 | 197 | 3.92E-23 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 161 | 203 | 7.1E-19 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 161 | 203 | 7.1E-19 | IPR036879 |
| SMART | SM00432 | madsneu2 | 149 | 203 | 3.3E-28 | IPR002100 |
| SMART | SM00432 | madsneu2 | 149 | 203 | 3.3E-28 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 149 | 203 | 27.445518 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 149 | 203 | 27.445518 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 151 | 171 | 8.1E-25 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 171 | 186 | 8.1E-25 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 186 | 203 | 8.1E-25 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 171 | 186 | 8.1E-25 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 151 | 171 | 8.1E-25 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 186 | 203 | 8.1E-25 | IPR002100 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62165.14 | - | 0 |
| RefSeq | XP_030933195.1 | MADS-box protein AGL42-like [Quercus lobata] | 0 |
| O64645 | MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1 | 0 | |
| TrEMBL | E9JTV3 | MADS-box protein TM3 subfamily OS=Coffea arabica OX=13443 GN=S01 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology