Basic Information
Locus ID:
Lb1G04390
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 336186137 | 336187324 | - | Lb1G04390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 18,338.23 Da | 65.27 | 80.62 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01486 | K-box region | 19 | 105 | 6.8E-24 | IPR002487 |
| Pfam | PF01486 | K-box region | 19 | 105 | 6.8E-24 | IPR002487 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 22 | 112 | 13.846169 | IPR002487 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 22 | 112 | 13.846169 | IPR002487 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 145 | - | - |
| Coils | Coil | Coil | 8 | 35 | - | - |
| Coils | Coil | Coil | 78 | 105 | - | - |
| Coils | Coil | Coil | 78 | 105 | - | - |
| Coils | Coil | Coil | 8 | 35 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51870.4 | - | 0 |
| RefSeq | NP_001276829.1 | MADS-box protein SOC1-like [Solanum lycopersicum] | 0 |
| Q9LT93 | MADS-box protein AGL71 OS=Arabidopsis thaliana OX=3702 GN=AGL71 PE=2 SV=1 | 0 | |
| TrEMBL | W5S185 | MADS-box transcription factor FYFL OS=Solanum lycopersicum OX=4081 GN=FYFL PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology