Basic Information
Locus ID:
Lb1G04347
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Ubiquitin-2 like Rad60 SUMO-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 334646490 | 334648669 | - | Lb1G04347 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 22,589.63 Da | 44.17 | 77.94 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01763 | Ubl_SUMO_like | 116 | 184 | 7.47977E-16 | - |
| CDD | cd01763 | Ubl_SUMO_like | 116 | 184 | 7.47977E-16 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 20 | 89 | 1.6E-6 | IPR022617 |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 126 | 187 | 1.2E-6 | IPR022617 |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 126 | 187 | 1.2E-6 | IPR022617 |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 20 | 89 | 1.6E-6 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 13 | 93 | 9.41E-13 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 114 | 188 | 1.1E-11 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 13 | 93 | 9.41E-13 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 114 | 188 | 1.1E-11 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 112 | 190 | 2.3E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 6 | 93 | 6.1E-17 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 112 | 190 | 2.3E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 6 | 93 | 6.1E-17 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 18 | 96 | 9.591273 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 18 | 96 | 9.591273 | IPR000626 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_019162380.1 | PREDICTED: uncharacterized protein LOC109158921 [Ipomoea nil] | 0 |
| P55852 | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A445C4N3 | Small ubiquitin-related modifier OS=Arachis hypogaea OX=3818 GN=Ahy_A07g031648 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||