Basic Information
Locus ID:
Lb1G04320
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 333848115 | 333854184 | + | Lb1G04320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 51,501.92 Da | 40.51 | 71.34 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 118 | 431 | 5.5E-87 | IPR000743 |
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 118 | 431 | 5.5E-87 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 81 | 466 | 6.86E-127 | IPR011050 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 81 | 466 | 6.86E-127 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 71 | 470 | 2.2E-123 | IPR012334 |
| Gene3D | G3DSA:2.160.20.10 | - | 71 | 470 | 2.2E-123 | IPR012334 |
| SMART | SM00710 | pbh1 | 354 | 375 | 74.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 295 | 315 | 1100.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 325 | 346 | 4.8 | IPR006626 |
| SMART | SM00710 | pbh1 | 272 | 293 | 3400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 222 | 252 | 510.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 325 | 346 | 4.8 | IPR006626 |
| SMART | SM00710 | pbh1 | 222 | 252 | 510.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 354 | 375 | 74.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 272 | 293 | 3400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 295 | 315 | 1100.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 302 | 315 | - | IPR000743 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 302 | 315 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 64 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_030472838.1 | polygalacturonase At1g48100-like [Syzygium oleosum] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B8Q085 | polygalacturonase At1g48100-like OS=Rhodamnia argentea OX=178133 GN=LOC115747786 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology