halophFGD

Basic Information

Locus ID: Lb1G04267

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: inositol 1,4,5-trisphosphate 5-phosphatase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr01	332028450	332036024	+	Lb1G04267

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.83	125,051.53 Da	47.59	77.40	-0.41

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09074	INPP5c	588	938	1.58212E-106	-
CDD	cd09074	INPP5c	588	938	1.58212E-106	-
Pfam	PF03372	Endonuclease/Exonuclease/phosphatase family	593	929	1.5E-13	IPR005135
Pfam	PF03372	Endonuclease/Exonuclease/phosphatase family	593	929	1.5E-13	IPR005135
SUPERFAMILY	SSF56219	DNase I-like	566	962	3.45E-57	IPR036691
SUPERFAMILY	SSF50978	WD40 repeat-like	212	568	2.93E-24	IPR036322
SUPERFAMILY	SSF50978	WD40 repeat-like	212	568	2.93E-24	IPR036322
SUPERFAMILY	SSF56219	DNase I-like	566	962	3.45E-57	IPR036691
Gene3D	G3DSA:3.60.10.10	Endonuclease/exonuclease/phosphatase	570	969	1.9E-102	IPR036691
Gene3D	G3DSA:2.130.10.10	-	153	323	8.0E-8	IPR015943
Gene3D	G3DSA:2.130.10.10	-	327	569	2.8E-11	IPR015943
Gene3D	G3DSA:3.60.10.10	Endonuclease/exonuclease/phosphatase	570	969	1.9E-102	IPR036691
Gene3D	G3DSA:2.130.10.10	-	327	569	2.8E-11	IPR015943
Gene3D	G3DSA:2.130.10.10	-	153	323	8.0E-8	IPR015943
SMART	SM00320	WD40_4	444	482	21.0	IPR001680
SMART	SM00320	WD40_4	484	521	13.0	IPR001680
SMART	SM00320	WD40_4	266	304	0.38	IPR001680
SMART	SM00320	WD40_4	202	243	16.0	IPR001680
SMART	SM00320	WD40_4	202	243	16.0	IPR001680
SMART	SM00320	WD40_4	444	482	21.0	IPR001680
SMART	SM00320	WD40_4	484	521	13.0	IPR001680
SMART	SM00128	i5p_5	586	944	2.2E-88	IPR000300
SMART	SM00128	i5p_5	586	944	2.2E-88	IPR000300
SMART	SM00320	WD40_4	266	304	0.38	IPR001680
MobiDBLite	mobidb-lite	consensus disorder prediction	1	52	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	52	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1107	1138	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	774	795	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1118	1138	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1107	1138	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1118	1138	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	774	795	-	-

Gene Ontology

Biological Process:

GO:0046856 (phosphatidylinositol dephosphorylation)

Molecular Function:

GO:0003824 (catalytic activity) GO:0005515 (protein binding) GO:0016791 (phosphatase activity)

KEGG Pathway

KO Term:

K01099 (inositol polyphosphate 5-phosphatase INPP5B/F [EC:3.1.3.36])

Pathway:

ko00562 (Inositol phosphate metabolism) map00562 (Inositol phosphate metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko04070 (Phosphatidylinositol signaling system) map04070 (Phosphatidylinositol signaling system)

Reaction:

R04404 (1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate + H2O <=> 1-Phosphatidyl-1D-myo-inositol 4-phosphate + Orthophosphate) R09827 (Phosphatidylinositol-3,4,5-trisphosphate + H2O <=> 1-Phosphatidyl-1D-myo-inositol 3,4-bisphosphate + Orthophosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G43900.1	Endonuclease/exonuclease/phosphatase family protein.
RefSeq	XP_010672504.2	type I inositol polyphosphate 5-phosphatase 12 isoform X2 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	O80560	Type I inositol polyphosphate 5-phosphatase 12 OS=Arabidopsis thaliana OX=3702 GN=IP5P12 PE=1 SV=2
TrEMBL	A0A7J7GN94	MSP domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_019894 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg10935, jg13306, jg9842
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10156, gene_15743
Amaranthaceae	Atriplex hortensis	2	Ah005139, Ah019686
Amaranthaceae	Beta vulgaris	2	BVRB_3g059200, BVRB_4g074530
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17390, Sbi_jg4979, Sbi_jg62040, Sbi_jg6737
Amaranthaceae	Salicornia europaea	2	Seu_jg12919, Seu_jg653
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00003781, GOSA_00015543
Amaranthaceae	Suaeda glauca	3	Sgl00555, Sgl05568, Sgl29457
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000009152, gene:ENSEOMG00000011754 ... gene:ENSEOMG00000030495, gene:ENSEOMG00000031261, gene:ENSEOMG00000043375
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0011590, CQ.Regalona.r1.3BG0011710 ... CQ.Regalona.r1.4AG0002820, CQ.Regalona.r1.4BG0002950
Anacardiaceae	Pistacia vera	2	pistato.v30038890, pistato.v30221410
Apiaceae	Apium graveolens	4	Ag11G03690, Ag1G00046, Ag5G02750, Ag8G01299
Arecaceae	Cocos nucifera	3	COCNU_02G008130, COCNU_11G002360, scaffold003697G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103715204, gene-LOC103722592
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.2040.V1.1, AsparagusV1_09.1682.V1.1 ... AsparagusV1_10.1295.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G14531, Ftri12G01313, Ftri17G01218
Brassicaceae	Arabidopsis thaliana	4	AT1G05630.1, AT1G65580.1, AT2G31830.2, AT2G43900.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10001286m.g.v1.0, Thhalv10006606m.g.v1.0 ... Thhalv10016160m.g.v1.0, Thhalv10018032m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g04480.v2.2, Sp4g14110.v2.2, Sp4g25990.v2.2 ... Sp5g20500.v2.2
Brassicaceae	Brassica nigra	6	BniB02g002460.2N, BniB03g001430.2N, BniB03g043170.2N ... BniB06g020860.2N, BniB06g044930.2N, BniB08g028680.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G1376, Ceq07G0258
Casuarinaceae	Casuarina glauca	2	Cgl06G1442, Cgl07G0246
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g00160, gene.Cymno05g06360
Dunaliellaceae	Dunaliella salina	1	Dusal.0256s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate06g19970, gene.Thate07g00050
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG11.465, evm.TU.LG12.230
Plantaginaceae	Plantago ovata	2	Pov_00025077, Pov_00038862
Plumbaginaceae	Limonium bicolor	5	Lb0G37887, Lb1G04267, Lb3G21174, Lb3G21179, Lb7G33447
Poaceae	Echinochloa crus-galli	9	AH03.2483, AH07.1752, AH08.2122, BH03.2624, BH07.1738 ... BH08.2235, CH03.2833, CH07.1593, CH08.2417
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0130870, gene-QOZ80_2BG0186120 ... gene-QOZ80_6AG0540400, gene-QOZ80_6BG0493710, gene-QOZ80_8AG0637880, gene-QOZ80_8BG0666350
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0391200.1, HORVU.MOREX.r3.5HG0492850.1 ... HORVU.MOREX.r3.7HG0682490.1
Poaceae	Lolium multiflorum	5	gene-QYE76_006399, gene-QYE76_007935, gene-QYE76_022112 ... gene-QYE76_030171, gene-QYE76_030180
Poaceae	Oryza coarctata	4	Oco04G010650, Oco15G010510, Oco17G008570, Oco18G008650
Poaceae	Oryza sativa	3	LOC_Os02g27620.1, LOC_Os08g41270.1, LOC_Os09g32440.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G230200, gene-BS78_04G134500 ... gene-BS78_07G197100
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0201854, Pt_Chr0201855, Pt_Chr0403701, Pt_Chr0403706 ... Pt_Chr0701510, Pt_Chr0701518
Poaceae	Sporobolus alterniflorus	8	Chr06G011620, Chr0G001140, Chr10G014860, Chr11G007380 ... Chr14G016580, Chr15G013370, Chr20G001560, Chr29G001930
Poaceae	Thinopyrum elongatum	3	Tel4E01G385300, Tel5E01G444100, Tel7E01G451100
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG011340, gene_TRIDC4BG039110 ... gene_TRIDC5AG041860, gene_TRIDC5BG045790, gene_TRIDC7AG033000, gene_TRIDC7BG024130
Poaceae	Triticum aestivum	9	TraesCS4A02G082700.1, TraesCS4B02G221300.1 ... TraesCS4D02G221700.1, TraesCS5A02G278100.1, TraesCS5B02G277500.1, TraesCS5D02G285100.2, TraesCS7A02G255500.2, TraesCS7B02G151900.2, TraesCS7D02G253900.2
Poaceae	Zea mays	5	Zm00001eb035960_P003, Zm00001eb102240_P001 ... Zm00001eb174880_P001, Zm00001eb241060_P002, Zm00001eb317410_P001
Poaceae	Zoysia japonica	5	nbis-gene-10393, nbis-gene-19025, nbis-gene-19426 ... nbis-gene-42651, nbis-gene-55974
Poaceae	Zoysia macrostachya	5	Zma_g16318, Zma_g23287, Zma_g30580, Zma_g30581, Zma_g32832
Portulacaceae	Portulaca oleracea	7	evm.TU.LG04.792, evm.TU.LG05.2137, evm.TU.LG06.1545 ... evm.TU.LG08.1384, evm.TU.LG11.900, evm.TU.LG15.1489, evm.TU.LG22.282
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g12210, gene.Posoc02g34630
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.1519, evm.TU.Scaffold_6_RagTag.543 ... evm.TU.Scaffold_3_RagTag.1563
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12811, nbisL1-mrna-15472
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-15837, nbisL1-mrna-20489
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-22522, nbisL1-mrna-435, nbisL1-mrna-436
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000010l.464, evm.TU.utg000011l.302 ... evm.TU.utg000019l.289
Rhizophoraceae	Kandelia obovata	3	Maker00001975, Maker00006896, Maker00008896
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1177, nbisL1-mrna-13775, nbisL1-mrna-5393
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-12932, nbisL1-mrna-20459, nbisL1-mrna-3705
Salicaceae	Populus euphratica	4	populus_peu06647, populus_peu20538, populus_peu22459 ... populus_peu23863
Solanaceae	Lycium barbarum	3	gene-LOC132604308, gene-LOC132609280, gene-LOC132616131
Solanaceae	Solanum chilense	2	SOLCI002246200, SOLCI003029900
Solanaceae	Solanum pennellii	5	gene-LOC107004647, gene-LOC107005773, gene-LOC107006083 ... gene-LOC107024969, gene-LOC107028043
Tamaricaceae	Reaumuria soongarica	3	STRG.28005_chr04_-, gene_12475, gene_6447
Tamaricaceae	Tamarix chinensis	3	TC01G1323, TC02G2976, TC12G1828
Zosteraceae	Zostera marina	3	Zosma01g32200.v3.1, Zosma03g17510.v3.1, Zosma04g26790.v3.1