Basic Information
Locus ID:
Lb1G04242
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 331146128 | 331150293 | + | Lb1G04242 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 34,333.33 Da | 30.35 | 70.67 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6 | 66 | 1.1E-6 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6 | 66 | 1.1E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 79 | 5.57E-11 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 79 | 5.57E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 74 | 1.0E-8 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 74 | 1.0E-8 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 8.6E-8 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 8.6E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 10.888906 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 10.888906 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 315 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_011018509.1 | PREDICTED: uncharacterized protein LOC105121532 isoform X1 [Populus euphratica] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5NR61 | RRM domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000245960 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology