Basic Information
Locus ID:
Lb1G04156
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
calmodulin binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 328343350 | 328350258 | - | Lb1G04156 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 129,211.11 Da | 43.52 | 81.03 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 38 | 168 | 1.2E-17 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 451 | 681 | 1.8E-63 | IPR013103 |
| Pfam | PF02042 | RWP-RK domain | 1033 | 1080 | 3.0E-21 | IPR003035 |
| Pfam | PF02042 | RWP-RK domain | 1033 | 1080 | 3.0E-21 | IPR003035 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 38 | 168 | 1.2E-17 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 451 | 681 | 1.8E-63 | IPR013103 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 447 | 749 | 6.45E-25 | IPR043502 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 447 | 749 | 6.45E-25 | IPR043502 |
| ProSiteProfiles | PS51519 | RWP-RK domain profile. | 1020 | 1102 | 17.518263 | IPR003035 |
| ProSiteProfiles | PS51519 | RWP-RK domain profile. | 1020 | 1102 | 17.518263 | IPR003035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 243 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_015885158.1 | uncharacterized mitochondrial protein AtMg00810-like [Ziziphus jujuba var. spinosa] | 0 |
| Q94HW2 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1R3J342 | Integrase catalytic domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_07965 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology