Basic Information
Locus ID:
Lb1G04134
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 327708550 | 327711193 | + | Lb1G04134 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 53,899.66 Da | 43.91 | 80.10 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 29 | 342 | 2.5628E-39 | - |
| CDD | cd00200 | WD40 | 29 | 342 | 2.5628E-39 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 129 | 164 | 3.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 171 | 207 | 8.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 29 | 61 | 1.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 129 | 164 | 3.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 171 | 207 | 8.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 29 | 61 | 1.3E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 29 | 474 | 1.58E-56 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 29 | 474 | 1.58E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 16 | 374 | 1.9E-57 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 16 | 374 | 1.9E-57 | IPR015943 |
| SMART | SM00320 | WD40_4 | 127 | 165 | 5.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 342 | 0.04 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 342 | 0.04 | IPR001680 |
| SMART | SM00320 | WD40_4 | 168 | 207 | 2.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 263 | 299 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 127 | 165 | 5.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 22 | 61 | 3.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 263 | 299 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 248 | 0.38 | IPR001680 |
| SMART | SM00320 | WD40_4 | 22 | 61 | 3.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 248 | 0.38 | IPR001680 |
| SMART | SM00320 | WD40_4 | 168 | 207 | 2.8E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 134 | 166 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 174 | 209 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 310 | 343 | 10.040596 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 174 | 209 | 10.838322 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 29 | 62 | 12.710129 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 29 | 70 | 15.72169 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 134 | 166 | 10.311051 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 174 | 209 | 10.838322 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 134 | 166 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 134 | 166 | 10.311051 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 29 | 62 | 12.710129 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 174 | 209 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 310 | 343 | 10.040596 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 29 | 70 | 15.72169 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 329 | 343 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 329 | 343 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 152 | 166 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 48 | 62 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 194 | 208 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 194 | 208 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 48 | 62 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 152 | 166 | 2.2E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24320.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_050237577.1 | uncharacterized protein LOC126687186 [Mercurialis annua] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | B9T7W7 | WD-repeat protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0194300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology