Basic Information
Locus ID:
Lb1G04112
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 326933805 | 326936145 | + | Lb1G04112 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.24 | 51,338.44 Da | 42.73 | 94.87 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 73 | 116 | 1.94033E-21 | - |
| CDD | cd16664 | RING-Ubox_PUB | 73 | 116 | 1.94033E-21 | - |
| Pfam | PF04564 | U-box domain | 69 | 142 | 3.1E-19 | IPR003613 |
| Pfam | PF04564 | U-box domain | 69 | 142 | 3.1E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 187 | 407 | 2.26E-12 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 187 | 407 | 2.26E-12 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 55 | 146 | 1.06E-28 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 55 | 146 | 1.06E-28 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 155 | 419 | 5.7E-13 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 149 | 3.0E-28 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 149 | 3.0E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 155 | 419 | 5.7E-13 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 72 | 136 | 6.2E-27 | IPR003613 |
| SMART | SM00504 | Ubox_2 | 72 | 136 | 6.2E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 68 | 143 | 31.368618 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 68 | 143 | 31.368618 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_034697152.1 | U-box domain-containing protein 21-like [Vitis riparia] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A438HXP2 | RING-type E3 ubiquitin transferase OS=Vitis vinifera OX=29760 GN=PUB21_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology