Basic Information
Locus ID:
Lb1G04003
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 322480275 | 322493334 | + | Lb1G04003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 172,942.05 Da | 41.92 | 84.88 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 341 | 494 | 4.06411E-34 | - |
| CDD | cd09272 | RNase_HI_RT_Ty1 | 164 | 303 | 1.48671E-77 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 1085 | 1126 | 2.33395E-21 | - |
| CDD | cd01989 | STK_N | 341 | 494 | 4.06411E-34 | - |
| CDD | cd09272 | RNase_HI_RT_Ty1 | 164 | 303 | 1.48671E-77 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 1085 | 1126 | 2.33395E-21 | - |
| Pfam | PF04564 | U-box domain | 1081 | 1150 | 2.8E-16 | IPR003613 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 802 | 1052 | 1.6E-28 | IPR001245 |
| Pfam | PF04564 | U-box domain | 1081 | 1150 | 2.8E-16 | IPR003613 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 802 | 1052 | 1.6E-28 | IPR001245 |
| Pfam | PF03732 | Retrotransposon gag protein | 1432 | 1522 | 4.8E-17 | IPR005162 |
| Pfam | PF03732 | Retrotransposon gag protein | 1432 | 1522 | 4.8E-17 | IPR005162 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 361 | 463 | 4.77E-5 | - |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 10 | 271 | 1.65E-16 | IPR043502 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1080 | 1151 | 8.48E-24 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1080 | 1151 | 8.48E-24 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 784 | 1052 | 3.32E-47 | IPR011009 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 10 | 271 | 1.65E-16 | IPR043502 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 784 | 1052 | 3.32E-47 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 361 | 463 | 4.77E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 873 | 1068 | 1.7E-31 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1080 | 1156 | 1.2E-26 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 770 | 872 | 2.4E-20 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 770 | 872 | 2.4E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 873 | 1068 | 1.7E-31 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1080 | 1156 | 1.2E-26 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 1084 | 1147 | 6.1E-25 | IPR003613 |
| SMART | SM00504 | Ubox_2 | 1084 | 1147 | 6.1E-25 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1080 | 1154 | 29.422564 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 800 | 1067 | 25.022139 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 800 | 1067 | 25.022139 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1080 | 1154 | 29.422564 | IPR003613 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 806 | 827 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 806 | 827 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 554 | - | - |
| Coils | Coil | Coil | 626 | 646 | - | - |
| Coils | Coil | Coil | 668 | 716 | - | - |
| Coils | Coil | Coil | 626 | 646 | - | - |
| Coils | Coil | Coil | 668 | 716 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49060.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_031281078.1 | U-box domain-containing protein 32 isoform X1 [Pistacia vera] | 0 |
| Q94A51 | U-box domain-containing protein 32 OS=Arabidopsis thaliana OX=3702 GN=PUB32 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6Z5Y7 | Putative U-box domain-containing protein 32 isoform X1 OS=Davidia involucrata OX=16924 GN=Din_009043 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology