Basic Information
Locus ID:
Lb1G03974
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Mitochondrial protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 321939205 | 321940978 | - | Lb1G03974 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.59 | 32,276.10 Da | 45.55 | 63.39 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13976 | GAG-pre-integrase domain | 55 | 105 | 9.5E-11 | IPR025724 |
| Pfam | PF13976 | GAG-pre-integrase domain | 55 | 105 | 9.5E-11 | IPR025724 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 289 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_020258464.1 | uncharacterized protein LOC109834858 [Asparagus officinalis] | 0 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J5ERD4 | CCHC-type domain-containing protein OS=Zingiber officinale OX=94328 GN=ZIOFF_069007 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7937 |
| Amaranthaceae | Suaeda glauca | 21 | Sgl01711, Sgl02695, Sgl06865, Sgl07852, Sgl10642, Sgl12296 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G004270 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G04102, Ftri5G14832 |
| Brassicaceae | Brassica nigra | 6 | BniB02g026020.2N, BniB03g050210.2N, BniB05g050630.2N ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03974 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_013442, gene-QYE76_055164, gene-QYE76_056584 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10413 |
| Zosteraceae | Zostera marina | 1 | Zosma06g16920.v3.1 |