Basic Information
Locus ID:
Lb1G03925
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Heat shock protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 320984552 | 320985612 | - | Lb1G03925 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.38 | 9,957.11 Da | 61.36 | 83.10 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00183 | Hsp90 protein | 1 | 79 | 2.8E-20 | IPR001404 |
| Pfam | PF00183 | Hsp90 protein | 1 | 79 | 2.8E-20 | IPR001404 |
| SUPERFAMILY | SSF110942 | HSP90 C-terminal domain | 3 | 50 | 9.94E-11 | IPR037196 |
| SUPERFAMILY | SSF110942 | HSP90 C-terminal domain | 3 | 50 | 9.94E-11 | IPR037196 |
| Gene3D | G3DSA:1.20.120.790 | - | 1 | 61 | 4.1E-20 | IPR037196 |
| Gene3D | G3DSA:1.20.120.790 | - | 1 | 61 | 4.1E-20 | IPR037196 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 77 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
map04217 (Necroptosis)
ko04612 (Antigen processing and presentation)
map04612 (Antigen processing and presentation)
map04621 (NOD-like receptor signaling pathway)
ko04626 (Plant-pathogen interaction)
map04626 (Plant-pathogen interaction)
map04657 (IL-17 signaling pathway)
map04659 (Th17 cell differentiation)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52640.1 | heat shock protein 90.1. Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance. | 0 |
| RefSeq | XP_016206273.1 | heat shock protein 82-like [Arachis ipaensis] | 0 |
| P51819 | Heat shock protein 83 OS=Ipomoea nil OX=35883 GN=HSP83A PE=2 SV=1 | 0 | |
| TrEMBL | A4ZF54 | Chaperone (Fragment) OS=Agave tequilana OX=386106 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology