halophFGD

Basic Information

Locus ID: Lb1G03842

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Topless-related protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr01	318394469	318402307	+	Lb1G03842

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.53	124,588.16 Da	37.86	84.21	-0.24

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	920	953	0.0044	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	458	492	9.0E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	498	535	0.21	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	498	535	0.21	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	920	953	0.0044	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	458	492	9.0E-4	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	836	1097	2.52E-34	IPR036322
SUPERFAMILY	SSF50978	WD40 repeat-like	352	673	1.68E-41	IPR036322
SUPERFAMILY	SSF50978	WD40 repeat-like	352	673	1.68E-41	IPR036322
SUPERFAMILY	SSF50978	WD40 repeat-like	836	1097	2.52E-34	IPR036322
Gene3D	G3DSA:2.130.10.10	-	515	695	1.3E-12	IPR015943
Gene3D	G3DSA:2.130.10.10	-	281	512	2.3E-26	IPR015943
Gene3D	G3DSA:2.130.10.10	-	770	1105	1.5E-28	IPR015943
Gene3D	G3DSA:2.130.10.10	-	770	1105	1.5E-28	IPR015943
Gene3D	G3DSA:2.130.10.10	-	515	695	1.3E-12	IPR015943
Gene3D	G3DSA:2.130.10.10	-	281	512	2.3E-26	IPR015943
SMART	SM00668	ctlh	34	92	1.8E-14	IPR006595
SMART	SM00320	WD40_4	585	625	23.0	IPR001680
SMART	SM00320	WD40_4	871	911	5.8	IPR001680
SMART	SM00320	WD40_4	628	669	130.0	IPR001680
SMART	SM00320	WD40_4	495	536	0.018	IPR001680
SMART	SM00320	WD40_4	1005	1045	120.0	IPR001680
SMART	SM00320	WD40_4	345	384	7.0	IPR001680
SMART	SM00667	Lish	4	36	4.0E-4	IPR006594
SMART	SM00320	WD40_4	914	953	1.3E-5	IPR001680
SMART	SM00320	WD40_4	405	445	26.0	IPR001680
SMART	SM00320	WD40_4	871	911	5.8	IPR001680
SMART	SM00320	WD40_4	495	536	0.018	IPR001680
SMART	SM00320	WD40_4	541	582	11.0	IPR001680
SMART	SM00320	WD40_4	451	492	1.2E-4	IPR001680
SMART	SM00320	WD40_4	831	868	31.0	IPR001680
SMART	SM00667	Lish	4	36	4.0E-4	IPR006594
SMART	SM00668	ctlh	34	92	1.8E-14	IPR006595
SMART	SM00320	WD40_4	831	868	31.0	IPR001680
SMART	SM00320	WD40_4	345	384	7.0	IPR001680
SMART	SM00320	WD40_4	628	669	130.0	IPR001680
SMART	SM00320	WD40_4	451	492	1.2E-4	IPR001680
SMART	SM00320	WD40_4	585	625	23.0	IPR001680
SMART	SM00320	WD40_4	541	582	11.0	IPR001680
SMART	SM00320	WD40_4	405	445	26.0	IPR001680
SMART	SM00320	WD40_4	1005	1045	120.0	IPR001680
SMART	SM00320	WD40_4	914	953	1.3E-5	IPR001680
ProSiteProfiles	PS50896	LIS1 homology (LisH) motif profile.	4	36	9.719679	IPR006594
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	458	501	10.441614	IPR001680
ProSiteProfiles	PS50897	C-terminal to LisH (CTLH) motif profile.	34	92	13.667385	IPR006595
ProSiteProfiles	PS50896	LIS1 homology (LisH) motif profile.	4	36	9.719679	IPR006594
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	921	955	10.15287	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	458	492	8.518333	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	921	962	12.446706	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	458	501	10.441614	IPR001680
ProSiteProfiles	PS50897	C-terminal to LisH (CTLH) motif profile.	34	92	13.667385	IPR006595
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	921	955	10.15287	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	921	962	12.446706	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	458	492	8.518333	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1116	1133	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1116	1133	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1104	1133	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1104	1133	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G15880.1	WUS-interacting protein 2.
RefSeq	XP_010687939.1	topless-related protein 4 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q27GK7	Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2
TrEMBL	A0A8K0HJQ5	Topless-related protein 4-like OS=Rhamnella rubrinervis OX=2594499 GN=FNV43_RR04172 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg13488, jg18249, jg18268, jg24027, jg25438, jg25460, jg4697 ... jg26543, jg29961, jg36984
Aizoaceae	Mesembryanthemum crystallinum	4	gene_10386, gene_10619, gene_21401, gene_21419
Amaranthaceae	Atriplex hortensis	3	Ah005700, Ah010441, Ah014307
Amaranthaceae	Beta vulgaris	3	BVRB_4g076250, BVRB_8g193940, BVRB_9g219140
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg11625, Sbi_jg17198, Sbi_jg25644, Sbi_jg46779 ... Sbi_jg46781, Sbi_jg61805, Sbi_jg9465
Amaranthaceae	Salicornia europaea	4	Seu_jg19151, Seu_jg20872, Seu_jg20874, Seu_jg460
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005133, GOSA_00010992, GOSA_00015387
Amaranthaceae	Suaeda glauca	8	Sgl24430, Sgl29605, Sgl41993, Sgl46768, Sgl56356, Sgl56388 ... Sgl61886, Sgl61919
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000011286, gene:ENSEOMG00000019274 ... gene:ENSEOMG00000038854, gene:ENSEOMG00000043305, gene:ENSEOMG00000048108, gene:ENSEOMG00000050136
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0007660, CQ.Regalona.r1.4BG0007850 ... CQ.Regalona.r1.7BG0009300, CQ.Regalona.r1.8AG0022300, CQ.Regalona.r1.8BG0020140, CQ.Regalona.r1.9AG0015260
Anacardiaceae	Pistacia vera	7	pistato.v30081820, pistato.v30099130, pistato.v30129150 ... pistato.v30233880, pistato.v30250460, pistato.v30250470, pistato.v30254890
Apiaceae	Apium graveolens	8	Ag10G01889, Ag4G01641, Ag5G00157, Ag6G00855, Ag7G00556 ... Ag7G01576, Ag9G01174, Ag9G01188
Arecaceae	Cocos nucifera	10	COCNU_01G017940, COCNU_07G002990, COCNU_08G005510 ... COCNU_09G000290, COCNU_10G002010, COCNU_11G000720, COCNU_11G008070, COCNU_16G001730, COCNU_16G003850, scaffold007249G000010
Arecaceae	Phoenix dactylifera	11	gene-LOC103698154, gene-LOC103706469, gene-LOC103706477 ... gene-LOC103706497, gene-LOC103707931, gene-LOC103711465, gene-LOC103711491, gene-LOC103713030, gene-LOC103715883, gene-LOC103717021, gene-LOC120105697
Asparagaceae	Asparagus officinalis	6	AsparagusV1_01.106.V1.1, AsparagusV1_01.1131.V1.1 ... AsparagusV1_03.3122.V1.1, AsparagusV1_05.132.V1.1, AsparagusV1_05.3276.V1.1, AsparagusV1_08.115.V1.1
Asteraceae	Flaveria trinervia	9	Ftri15G09924, Ftri16G18463, Ftri18G22231, Ftri18G22477 ... Ftri1G19714, Ftri7G31324, Ftri8G02263, Ftri9G26698, FtriNA18121
Brassicaceae	Arabidopsis thaliana	5	AT1G15750.1, AT1G80490.2, AT3G15880.2, AT3G16830.1 ... AT5G27030.2
Brassicaceae	Eutrema salsugineum	7	Thhalv10003550m.g.v1.0, Thhalv10006622m.g.v1.0 ... Thhalv10012501m.g.v1.0, Thhalv10018037m.g.v1.0, Thhalv10019939m.g.v1.0, Thhalv10019944m.g.v1.0, Thhalv10024263m.g.v1.0
Brassicaceae	Schrenkiella parvula	7	Sp1g14040.v2.2, Sp2g21040.v2.2, Sp3g14210.v2.2 ... Sp3g15070.v2.2, Sp5g35310.v2.2, Sp6g34310.v2.2, Sp7g14550.v2.2
Brassicaceae	Brassica nigra	11	BniB01g047880.2N, BniB02g078890.2N, BniB03g026420.2N ... BniB04g004650.2N, BniB05g027650.2N, BniB06g041080.2N, BniB06g051460.2N, BniB07g028530.2N, BniB07g053080.2N, BniB07g053910.2N, BniB08g003920.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq02G0325, Ceq02G0352, Ceq04G2380, Ceq04G2381, Ceq06G0596 ... Ceq06G1142, Ceq09G1934
Casuarinaceae	Casuarina glauca	8	Cgl02G0367, Cgl04G1158, Cgl04G1159, Cgl04G2584, Cgl04G2585 ... Cgl06G0616, Cgl06G1190, Cgl09G2115
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno02g11470, gene.Cymno03g03690, gene.Cymno13g01790 ... gene.Cymno17g05000, gene.Cymno18g05380
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g18130, gene.Thate02g06650, gene.Thate09g04540
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-5457, nbisL1-mrna-704, nbisL1-mrna-8146 ... nbisL1-mrna-8253
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.769, evm.TU.LG03.1795, evm.TU.LG03.2505 ... evm.TU.LG07.933, evm.TU.LG11.1250
Plantaginaceae	Plantago ovata	6	Pov_00003814, Pov_00007215, Pov_00007333, Pov_00020197 ... Pov_00035267, Pov_00039245
Plumbaginaceae	Limonium bicolor	6	Lb1G03842, Lb1G06589, Lb1G06617, Lb3G18283, Lb4G21947 ... Lb6G31728
Poaceae	Echinochloa crus-galli	9	AH01.4312, AH02.990, AH08.405, BH01.4618, BH02.1138 ... BH08.415, CH01.4928, CH02.1162, CH08.490
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0005320, gene-QOZ80_1BG0053950 ... gene-QOZ80_3AG0241470, gene-QOZ80_3BG0286640, gene-QOZ80_8AG0618460, gene-QOZ80_8BG0645950
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0253400.1, HORVU.MOREX.r3.4HG0391150.1 ... HORVU.MOREX.r3.7HG0695720.1
Poaceae	Lolium multiflorum	4	gene-QYE76_048005, gene-QYE76_052118, gene-QYE76_069212 ... gene-QYE76_069222
Poaceae	Oryza coarctata	6	Oco01G006840, Oco02G007160, Oco05G008470, Oco06G008770 ... Oco15G002700, Oco16G002720
Poaceae	Oryza sativa	3	LOC_Os01g15020.1, LOC_Os03g14980.1, LOC_Os08g06480.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G414900, gene-BS78_03G104900 ... gene-BS78_07G054000, gene-BS78_07G054100
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0102076, Pt_Chr0102097, Pt_Chr0604056, Pt_Chr0605327
Poaceae	Sporobolus alterniflorus	12	Chr01G029820, Chr02G026100, Chr03G002050, Chr04G000280 ... Chr05G003850, Chr07G000330, Chr08G003020, Chr12G009710, Chr16G001690, Chr17G001590, Chr20G011500, Chr29G011110
Poaceae	Thinopyrum elongatum	3	Tel3E01G303700, Tel4E01G384600, Tel7E01G511700
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG024050, gene_TRIDC3BG027960 ... gene_TRIDC4AG011380, gene_TRIDC4BG039040, gene_TRIDC7AG041110, gene_TRIDC7BG031090
Poaceae	Triticum aestivum	9	TraesCS3A02G173300.1, TraesCS3B02G204200.3 ... TraesCS3D02G179800.3, TraesCS4A02G083300.2, TraesCS4B02G220900.3, TraesCS4D02G221200.1, TraesCS7A02G296100.6, TraesCS7B02G189300.1, TraesCS7D02G293500.1
Poaceae	Zea mays	5	Zm00001eb011010_P001, Zm00001eb127680_P004 ... Zm00001eb333590_P001, Zm00001eb398420_P001, Zm00001eb415530_P001
Poaceae	Zoysia japonica	3	nbis-gene-2224, nbis-gene-32424, nbis-gene-7274
Poaceae	Zoysia macrostachya	5	Zma_g1618, Zma_g22518, Zma_g4003, Zma_g7413, Zma_g9745
Portulacaceae	Portulaca oleracea	8	evm.TU.LG06.1280, evm.TU.LG07.1780, evm.TU.LG07.1797 ... evm.TU.LG11.625, evm.TU.LG15.1375, evm.TU.LG15.1394, evm.TU.LG18.1282, evm.TU.LG20.604
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g04070, gene.Posoc07g01330, gene.Posoc10g04060
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_10_RagTag.58, evm.TU.Scaffold_11_RagTag.657 ... evm.TU.Scaffold_18_RagTag.335, evm.TU.Scaffold_1_RagTag.86, evm.TU.Scaffold_2_RagTag.2082, evm.TU.Scaffold_4_RagTag.2293
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-12874, nbisL1-mrna-25148, nbisL1-mrna-28170 ... nbisL1-mrna-2895, nbisL1-mrna-7275, nbisL1-mrna-8190
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-11286, nbisL1-mrna-14193, nbisL1-mrna-17193 ... nbisL1-mrna-21312, nbisL1-mrna-3308, nbisL1-mrna-5161
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-12280, nbisL1-mrna-13665, nbisL1-mrna-16498 ... nbisL1-mrna-5038, nbisL1-mrna-5172
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000005l.36, evm.TU.utg000008l.1347 ... evm.TU.utg000009l.41, evm.TU.utg000023l.228, evm.TU.utg000033l.39
Rhizophoraceae	Kandelia obovata	6	Maker00000014, Maker00005668, Maker00008522, Maker00011416 ... Maker00014662, Maker00019026
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-12997, nbisL1-mrna-16734, nbisL1-mrna-1837 ... nbisL1-mrna-987
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-14461, nbisL1-mrna-16135, nbisL1-mrna-22211 ... nbisL1-mrna-77, nbisL1-mrna-8336
Salicaceae	Populus euphratica	11	populus_peu02633, populus_peu04730, populus_peu04731 ... populus_peu05742, populus_peu11115, populus_peu12945, populus_peu12946, populus_peu13327, populus_peu15646, populus_peu16212, populus_peu33477
Solanaceae	Lycium barbarum	6	gene-LOC132603150, gene-LOC132633000, gene-LOC132633066 ... gene-LOC132635387, gene-LOC132636158, gene-LOC132646001
Solanaceae	Solanum chilense	5	SOLCI000856800, SOLCI002474200, SOLCI005587800 ... SOLCI006336000, SOLCI007513400
Solanaceae	Solanum pennellii	6	gene-LOC107004473, gene-LOC107013633, gene-LOC107014300 ... gene-LOC107026193, gene-LOC107027199, gene-LOC107028481
Tamaricaceae	Reaumuria soongarica	4	STRG.12160_chr02_-, gene_10945, gene_10958, gene_17174
Tamaricaceae	Tamarix chinensis	3	TC02G0882, TC08G2273, TC10G1281
Zosteraceae	Zostera marina	4	Zosma02g02590.v3.1, Zosma02g16750.v3.1, Zosma03g23160.v3.1 ... Zosma05g21200.v3.1