Basic Information
Locus ID:
Lb1G03809
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 317523019 | 317523897 | - | Lb1G03809 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 22,785.58 Da | 50.90 | 67.33 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 83 | 179 | 3.16487E-30 | - |
| CDD | cd00030 | C2 | 83 | 179 | 3.16487E-30 | - |
| Pfam | PF00168 | C2 domain | 81 | 175 | 2.5E-23 | IPR000008 |
| Pfam | PF00168 | C2 domain | 81 | 175 | 2.5E-23 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 80 | 199 | 5.06E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 80 | 199 | 5.06E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 71 | 200 | 1.0E-33 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 71 | 200 | 1.0E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 82 | 180 | 1.8E-21 | IPR000008 |
| SMART | SM00239 | C2_3c | 82 | 180 | 1.8E-21 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 64 | 181 | 19.334328 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 64 | 181 | 19.334328 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 146 | 154 | 8.0E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 98 | 110 | 8.0E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 124 | 137 | 8.0E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 98 | 110 | 8.0E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 124 | 137 | 8.0E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 146 | 154 | 8.0E-6 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.2 | - | 0 |
| RefSeq | XP_028062948.1 | synaptotagmin-5-like [Camellia sinensis] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A2ZAL3 | Synaptotagmin-5 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110945pilonHSYRG00324 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology