Basic Information
Locus ID:
Lb1G03687
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
F-box FBD LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 314860010 | 314861757 | + | Lb1G03687 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 56,488.94 Da | 44.98 | 88.16 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 56 | 91 | 6.9E-7 | IPR001810 |
| Pfam | PF00646 | F-box domain | 56 | 91 | 6.9E-7 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 178 | 385 | 1.26E-6 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 51 | 94 | 4.58E-12 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 51 | 94 | 4.58E-12 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 178 | 385 | 1.26E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 41 | 92 | 5.8E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 41 | 92 | 5.8E-9 | - |
| SMART | SM00256 | fbox_2 | 58 | 98 | 1.6E-4 | IPR001810 |
| SMART | SM00256 | fbox_2 | 58 | 98 | 1.6E-4 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39490.1 | F-box family protein. | 0 |
| RefSeq | XP_031257625.1 | F-box protein At2g39490-like [Pistacia vera] | 0 |
| Q5S4V7 | F-box protein At2g39490 OS=Arabidopsis thaliana OX=3702 GN=At2g39490 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T1RSS8 | F-box domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_01G282600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14893 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000017220 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30174930 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G21890 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G39490.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016769m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g21790.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g005700.2N, BniB01g005720.2N, BniB06g005340.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0725 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0737, Cgl08G1248 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4010 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1568 |
| Plumbaginaceae | Limonium bicolor | 8 | Lb1G02628, Lb1G03099, Lb1G03685, Lb1G03686, Lb1G03687 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1692 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26034 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10768 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4504 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.944 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000297 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2109 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9485 |
| Salicaceae | Populus euphratica | 1 | populus_peu06387 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3882 |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G3453, TC05G2272, TC10G1714 |