Basic Information
Locus ID:
Lb1G03661
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 314138242 | 314139526 | - | Lb1G03661 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 43,238.01 Da | 48.50 | 75.89 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 343 | 386 | 2.78847E-14 | - |
| CDD | cd16461 | RING-H2_EL5_like | 343 | 386 | 2.78847E-14 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 27 | 98 | 2.3E-15 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 343 | 386 | 1.6E-12 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 27 | 98 | 2.3E-15 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 343 | 386 | 1.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 343 | 389 | 4.59E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 343 | 389 | 4.59E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 301 | 391 | 4.0E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 301 | 391 | 4.0E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 344 | 385 | 1.3E-4 | IPR001841 |
| SMART | SM00184 | ring_2 | 344 | 385 | 1.3E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 344 | 386 | 12.267982 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 344 | 386 | 12.267982 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_007051560.2 | PREDICTED: putative RING-H2 finger protein ATL21A [Theobroma cacao] | 0 |
| Q9SKK8 | RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P6SIC8 | Putative chromatin regulator PHD family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0359361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology