Basic Information
Locus ID:
Lb1G03647
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 313788394 | 313793066 | - | Lb1G03647 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.57 | 40,583.91 Da | 47.82 | 81.17 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 202 | 236 | 0.042 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 162 | 196 | 6.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 162 | 196 | 6.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 202 | 236 | 0.042 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 157 | 323 | 1.32E-26 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 157 | 323 | 1.32E-26 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 131 | 235 | 2.1E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 131 | 235 | 2.1E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 236 | 340 | 9.6E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 236 | 340 | 9.6E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 261 | 307 | 7.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 159 | 197 | 1.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 200 | 255 | 0.015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 159 | 197 | 1.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 307 | 7.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 200 | 255 | 0.015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 166 | 198 | 9.520146 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 166 | 198 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 166 | 206 | 12.313033 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 166 | 206 | 12.313033 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 184 | 198 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 184 | 198 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42010.2 | - | 0 |
| RefSeq | XP_030975330.1 | vegetative incompatibility protein HET-E-1 [Quercus lobata] | 0 |
| Q03177 | WD repeat-containing protein YMR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YMR102C PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J4VRH8 | WD_REPEATS_REGION domain-containing protein OS=Castanea mollissima OX=60419 GN=CMV_006163 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||