Basic Information
Locus ID:
Lb1G03524
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 310098767 | 310101039 | + | Lb1G03524 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 57,667.94 Da | 39.93 | 87.14 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 444 | 485 | 4.45073E-22 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 444 | 485 | 4.45073E-22 | - |
| Pfam | PF00069 | Protein kinase domain | 148 | 403 | 3.4E-44 | IPR000719 |
| Pfam | PF04564 | U-box domain | 441 | 512 | 1.2E-20 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 148 | 403 | 3.4E-44 | IPR000719 |
| Pfam | PF04564 | U-box domain | 441 | 512 | 1.2E-20 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 127 | 412 | 2.29E-64 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 435 | 511 | 4.5E-26 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 127 | 412 | 2.29E-64 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 435 | 511 | 4.5E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 220 | 425 | 1.4E-45 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 439 | 513 | 5.0E-29 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 439 | 513 | 5.0E-29 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 132 | 219 | 3.8E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 220 | 425 | 1.4E-45 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 132 | 219 | 3.8E-26 | - |
| SMART | SM00220 | serkin_6 | 147 | 415 | 4.0E-31 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 443 | 506 | 3.5E-28 | IPR003613 |
| SMART | SM00220 | serkin_6 | 147 | 415 | 4.0E-31 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 443 | 506 | 3.5E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 439 | 513 | 38.560173 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 439 | 513 | 38.560173 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 147 | 416 | 34.392982 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 147 | 416 | 34.392982 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 265 | 277 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 265 | 277 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 153 | 174 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 153 | 174 | - | IPR017441 |
| Coils | Coil | Coil | 34 | 117 | - | - |
| Coils | Coil | Coil | 34 | 117 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_024024018.1 | U-box domain-containing protein 33 [Morus notabilis] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A251QHA9 | RING-type E3 ubiquitin transferase OS=Prunus persica OX=3760 GN=PRUPE_2G170900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology