Basic Information
Locus ID:
Lb1G03521
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 310073287 | 310074961 | + | Lb1G03521 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 44,848.58 Da | 35.64 | 88.33 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 337 | 378 | 2.45783E-22 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 337 | 378 | 2.45783E-22 | - |
| Pfam | PF00069 | Protein kinase domain | 41 | 296 | 1.8E-44 | IPR000719 |
| Pfam | PF04564 | U-box domain | 334 | 402 | 1.5E-19 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 41 | 296 | 1.8E-44 | IPR000719 |
| Pfam | PF04564 | U-box domain | 334 | 402 | 1.5E-19 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 20 | 305 | 1.12E-64 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 20 | 305 | 1.12E-64 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 328 | 402 | 1.15E-25 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 328 | 402 | 1.15E-25 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 25 | 112 | 2.5E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 113 | 318 | 7.9E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 25 | 112 | 2.5E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 331 | 402 | 1.9E-28 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 331 | 402 | 1.9E-28 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 113 | 318 | 7.9E-46 | - |
| SMART | SM00220 | serkin_6 | 40 | 308 | 4.0E-31 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 336 | 399 | 3.5E-28 | IPR003613 |
| SMART | SM00220 | serkin_6 | 40 | 308 | 4.0E-31 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 336 | 399 | 3.5E-28 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 40 | 309 | 34.392982 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 332 | 402 | 38.639782 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 332 | 402 | 38.639782 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 40 | 309 | 34.392982 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 158 | 170 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 46 | 67 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 46 | 67 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 158 | 170 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_010661796.1 | PREDICTED: U-box domain-containing protein 33 isoform X2 [Vitis vinifera] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | D7UCB8 | RING-type E3 ubiquitin transferase OS=Vitis vinifera OX=29760 GN=VIT_15s0046g02480 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology