Basic Information
Locus ID:
Lb1G03484
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 308900276 | 308903620 | + | Lb1G03484 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 45,447.95 Da | 70.33 | 84.62 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 352 | 394 | 7.9E-13 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 352 | 394 | 7.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 343 | 399 | 5.3E-20 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 343 | 399 | 5.3E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 341 | 407 | 6.8E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 341 | 407 | 6.8E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 353 | 393 | 6.3E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 353 | 393 | 6.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 353 | 394 | 12.415513 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 353 | 394 | 12.415513 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 70 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61180.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_016575694.1 | E3 ubiquitin-protein ligase At1g12760 [Capsicum annuum] | 0 |
| Q9LN71 | E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g12760 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J4ZFK8 | RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_019186 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology