Basic Information
Locus ID:
Lb1G03462
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 308267233 | 308270351 | + | Lb1G03462 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 31,918.66 Da | 34.22 | 105.27 | 0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 43 | 98 | 5.1E-6 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 43 | 98 | 5.1E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 38 | 116 | 1.8E-9 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 38 | 116 | 1.8E-9 | IPR035979 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 97 | 263 | 3.27E-6 | IPR036259 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 97 | 263 | 3.27E-6 | IPR036259 |
| Gene3D | G3DSA:3.30.70.330 | - | 91 | 100 | 6.3E-9 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 43 | 90 | 6.3E-9 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 43 | 90 | 6.3E-9 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 91 | 100 | 6.3E-9 | IPR012677 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 160 | 269 | 2.5E-5 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 160 | 269 | 2.5E-5 | IPR036259 |
| SMART | SM00360 | rrm1_1 | 42 | 115 | 5.1E-5 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 42 | 115 | 5.1E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 41 | 121 | 9.098089 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 41 | 121 | 9.098089 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16980.6 | - | 0 |
| RefSeq | XP_040364245.1 | hippocampus abundant transcript 1 protein isoform X2 [Rosa chinensis] | 0 |
| TrEMBL | A0A5J5WIP4 | MFS domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A03G222500v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology