Basic Information
Locus ID:
Lb1G03410
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 306202218 | 306206305 | + | Lb1G03410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 59,594.29 Da | 38.59 | 75.74 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04434 | SWIM zinc finger | 384 | 412 | 3.6E-6 | IPR007527 |
| Pfam | PF04434 | SWIM zinc finger | 384 | 412 | 3.6E-6 | IPR007527 |
| Pfam | PF10551 | MULE transposase domain | 121 | 219 | 5.9E-14 | IPR018289 |
| Pfam | PF10551 | MULE transposase domain | 121 | 219 | 5.9E-14 | IPR018289 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 483 | 509 | 7.67E-5 | IPR036875 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 483 | 509 | 7.67E-5 | IPR036875 |
| SMART | SM00575 | 26again6 | 391 | 418 | 7.6E-4 | IPR006564 |
| SMART | SM00575 | 26again6 | 391 | 418 | 7.6E-4 | IPR006564 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 384 | 416 | 9.890841 | IPR007527 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 491 | 508 | 8.713199 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 491 | 508 | 8.713199 | IPR001878 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 384 | 416 | 9.890841 | IPR007527 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64255.1 | MuDR family transposase. | 0 |
| RefSeq | XP_025692420.1 | uncharacterized protein LOC112794645 [Arachis hypogaea] | 0 |
| TrEMBL | A0A444XI18 | SWIM-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g096091 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||