Basic Information
Locus ID:
Lb1G03382
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 305183614 | 305193935 | + | Lb1G03382 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 84,079.60 Da | 31.65 | 88.95 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 58 | 358 | 1.40521E-158 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 58 | 358 | 1.40521E-158 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 377 | 681 | 6.08838E-145 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 377 | 681 | 6.08838E-145 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 380 | 676 | 7.5E-25 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 380 | 676 | 7.5E-25 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 57 | 354 | 1.18E-36 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 376 | 681 | 1.2E-37 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 57 | 354 | 1.18E-36 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 376 | 681 | 1.2E-37 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 375 | 681 | 1.9E-40 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 56 | 356 | 1.2E-29 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 56 | 356 | 1.2E-29 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 375 | 681 | 1.9E-40 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 58 | 359 | 32.770351 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 58 | 359 | 32.770351 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 375 | 682 | 30.123199 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 375 | 682 | 30.123199 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_006474966.1 | glycerophosphodiester phosphodiesterase GDPDL3 [Citrus sinensis] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A5B6Z5I1 | glycerophosphodiester phosphodiesterase OS=Davidia involucrata OX=16924 GN=Din_008549 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology