Basic Information
Locus ID:
Lb1G03184
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
DA1-related 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 298142298 | 298148238 | + | Lb1G03184 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 58,205.12 Da | 46.11 | 67.86 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 229 | 281 | 4.86886E-25 | - |
| CDD | cd09396 | LIM_DA1 | 229 | 281 | 4.86886E-25 | - |
| Pfam | PF00412 | LIM domain | 229 | 283 | 2.4E-8 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 378 | 510 | 6.2E-66 | IPR022087 |
| Pfam | PF12315 | Protein DA1 | 378 | 510 | 6.2E-66 | IPR022087 |
| Pfam | PF00412 | LIM domain | 229 | 283 | 2.4E-8 | IPR001781 |
| Pfam | PF04434 | SWIM zinc finger | 40 | 69 | 8.1E-9 | IPR007527 |
| Pfam | PF04434 | SWIM zinc finger | 40 | 69 | 8.1E-9 | IPR007527 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 255 | 317 | 7.93E-6 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 221 | 254 | 1.35E-5 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 255 | 317 | 7.93E-6 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 221 | 254 | 1.35E-5 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 224 | 288 | 1.6E-11 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 224 | 288 | 1.6E-11 | - |
| SMART | SM00132 | lim_4 | 228 | 280 | 1.4E-5 | IPR001781 |
| SMART | SM00575 | 26again6 | 47 | 74 | 1.5E-4 | IPR006564 |
| SMART | SM00132 | lim_4 | 228 | 280 | 1.4E-5 | IPR001781 |
| SMART | SM00575 | 26again6 | 47 | 74 | 1.5E-4 | IPR006564 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 40 | 72 | 9.569326 | IPR007527 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 227 | 287 | 10.8307 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 227 | 287 | 10.8307 | IPR001781 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 40 | 72 | 9.569326 | IPR007527 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 229 | 263 | - | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 229 | 263 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 179 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.1 | DA1-related protein 2. | 0 |
| RefSeq | XP_006435595.1 | protein DA1-related 2 isoform X2 [Citrus clementina] | 0 |
| Q0WSN2 | Protein DA1-related 2 OS=Arabidopsis thaliana OX=3702 GN=DAR2 PE=1 SV=1 | 0 | |
| TrEMBL | V4TBC3 | LIM zinc-binding domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10031291mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology