Basic Information
Locus ID:
Lb1G03179
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 298021402 | 298025753 | - | Lb1G03179 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 62,386.88 Da | 51.22 | 64.15 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 179 | 231 | 2.29584E-25 | - |
| CDD | cd09396 | LIM_DA1 | 179 | 231 | 2.29584E-25 | - |
| Pfam | PF12315 | Protein DA1 | 328 | 545 | 1.3E-94 | IPR022087 |
| Pfam | PF12315 | Protein DA1 | 328 | 545 | 1.3E-94 | IPR022087 |
| Pfam | PF00412 | LIM domain | 179 | 233 | 2.6E-8 | IPR001781 |
| Pfam | PF00412 | LIM domain | 179 | 233 | 2.6E-8 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 171 | 204 | 1.59E-5 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 171 | 204 | 1.59E-5 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 174 | 238 | 1.8E-11 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 174 | 238 | 1.8E-11 | - |
| SMART | SM00132 | lim_4 | 178 | 230 | 1.4E-5 | IPR001781 |
| SMART | SM00132 | lim_4 | 178 | 230 | 1.4E-5 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 177 | 237 | 10.8307 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 177 | 237 | 10.8307 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 179 | 213 | - | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 179 | 213 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 128 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.1 | DA1-related protein 2. | 0 |
| RefSeq | XP_006435596.1 | protein DA1-related 2 isoform X1 [Citrus clementina] | 0 |
| Q0WSN2 | Protein DA1-related 2 OS=Arabidopsis thaliana OX=3702 GN=DAR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7A6I1 | LIM zinc-binding domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_020979 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology