Basic Information
Locus ID:
Lb1G03041
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 293067970 | 293075464 | + | Lb1G03041 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 58,295.08 Da | 53.28 | 77.74 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 338 | 515 | 3.14449E-112 | IPR044098 |
| CDD | cd08066 | MPN_AMSH_like | 338 | 515 | 3.14449E-112 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 12 | 101 | 2.1E-10 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 337 | 444 | 7.5E-19 | IPR000555 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 337 | 444 | 7.5E-19 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 12 | 101 | 2.1E-10 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 340 | 470 | 3.53E-20 | - |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 340 | 470 | 3.53E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 328 | 517 | 5.9E-72 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 6 | 116 | 6.7E-30 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 6 | 116 | 6.7E-30 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 328 | 517 | 5.9E-72 | - |
| SMART | SM00232 | pad1_6 | 340 | 468 | 4.0E-14 | IPR000555 |
| SMART | SM00232 | pad1_6 | 340 | 468 | 4.0E-14 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 341 | 471 | 30.267721 | IPR037518 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 341 | 471 | 30.267721 | IPR037518 |
| Coils | Coil | Coil | 91 | 111 | - | - |
| Coils | Coil | Coil | 91 | 111 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_010670900.1 | AMSH-like ubiquitin thioesterase 3 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7N2LV65 | MPN domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology