Basic Information
Locus ID:
Lb1G02998
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 291837717 | 291842779 | - | Lb1G02998 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 60,242.15 Da | 29.97 | 102.06 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 366 | 468 | 3.29441E-25 | - |
| CDD | cd00030 | C2 | 366 | 468 | 3.29441E-25 | - |
| Pfam | PF00168 | C2 domain | 364 | 468 | 3.2E-23 | IPR000008 |
| Pfam | PF00168 | C2 domain | 364 | 468 | 3.2E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 171 | 350 | 3.1E-13 | IPR039010 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 171 | 350 | 3.1E-13 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 362 | 494 | 8.25E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 362 | 494 | 8.25E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 360 | 502 | 1.7E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 360 | 502 | 1.7E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 365 | 465 | 6.5E-23 | IPR000008 |
| SMART | SM00239 | C2_3c | 365 | 465 | 6.5E-23 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 168 | 351 | 28.65917 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 345 | 466 | 20.733362 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 168 | 351 | 28.65917 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 345 | 466 | 20.733362 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 538 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_028062948.1 | synaptotagmin-5-like [Camellia sinensis] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B6ZBJ9 | Putative synaptotagmin-5 OS=Davidia involucrata OX=16924 GN=Din_010830 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology