Basic Information
Locus ID:
Lb1G02768
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
G3BP-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 283086304 | 283092444 | - | Lb1G02768 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 48,044.12 Da | 56.76 | 66.03 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 312 | 383 | 3.10677E-10 | - |
| CDD | cd00590 | RRM_SF | 312 | 383 | 3.10677E-10 | - |
| CDD | cd00780 | NTF2 | 8 | 125 | 1.41252E-36 | IPR018222 |
| CDD | cd00780 | NTF2 | 8 | 125 | 1.41252E-36 | IPR018222 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 312 | 369 | 6.4E-8 | IPR000504 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 12 | 127 | 8.6E-26 | IPR002075 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 312 | 369 | 6.4E-8 | IPR000504 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 12 | 127 | 8.6E-26 | IPR002075 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 306 | 414 | 6.45E-17 | IPR035979 |
| SUPERFAMILY | SSF54427 | NTF2-like | 6 | 130 | 2.24E-30 | IPR032710 |
| SUPERFAMILY | SSF54427 | NTF2-like | 6 | 130 | 2.24E-30 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 306 | 414 | 6.45E-17 | IPR035979 |
| Gene3D | G3DSA:3.10.450.50 | - | 3 | 131 | 1.3E-32 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 289 | 437 | 8.3E-16 | IPR012677 |
| Gene3D | G3DSA:3.10.450.50 | - | 3 | 131 | 1.3E-32 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 289 | 437 | 8.3E-16 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 311 | 383 | 7.1E-10 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 311 | 383 | 7.1E-10 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 310 | 387 | 11.178847 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 12 | 127 | 27.499228 | IPR018222 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 12 | 127 | 27.499228 | IPR018222 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 310 | 387 | 11.178847 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 291 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43960.1 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | XP_010684875.1 | nuclear transport factor 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RH33 | G3BP-like protein OS=Spinacia oleracea OX=3562 GN=SOVF_073050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology