Basic Information
Locus ID:
Lb1G02500
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 270464441 | 270466384 | - | Lb1G02500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 42,701.14 Da | 58.11 | 75.91 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 47 | 291 | 8.99E-30 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 47 | 291 | 8.99E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 30 | 378 | 3.0E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 30 | 378 | 3.0E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 29 | 72 | 68.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 249 | 290 | 0.025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 206 | 246 | 0.75 | IPR001680 |
| SMART | SM00320 | WD40_4 | 206 | 246 | 0.75 | IPR001680 |
| SMART | SM00320 | WD40_4 | 29 | 72 | 68.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 249 | 290 | 0.025 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.2 | - | 0 |
| RefSeq | XP_021864817.1 | autophagy-related protein 18c-like [Spinacia oleracea] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9B0V2 | Autophagy-related protein 18c OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology