halophFGD

Basic Information

Locus ID: Lb1G02466

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Ubiquitin carboxyl-terminal hydrolase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr01	269139890	269148900	-	Lb1G02466

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.70	48,949.68 Da	38.79	94.21	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00443	Ubiquitin carboxyl-terminal hydrolase	203	303	2.1E-19	IPR001394
Pfam	PF00443	Ubiquitin carboxyl-terminal hydrolase	203	303	2.1E-19	IPR001394
SUPERFAMILY	SSF54001	Cysteine proteinases	201	345	3.34E-33	IPR038765
SUPERFAMILY	SSF54001	Cysteine proteinases	201	345	3.34E-33	IPR038765
Gene3D	G3DSA:3.90.70.10	Cysteine proteinases	187	386	1.5E-36	-
Gene3D	G3DSA:3.90.70.10	Cysteine proteinases	187	386	1.5E-36	-
ProSiteProfiles	PS50235	Ubiquitin specific protease (USP) domain profile.	203	442	14.496602	IPR028889
ProSiteProfiles	PS50235	Ubiquitin specific protease (USP) domain profile.	203	442	14.496602	IPR028889
ProSitePatterns	PS00972	Ubiquitin specific protease (USP) domain signature 1.	204	219	-	IPR018200
ProSitePatterns	PS00972	Ubiquitin specific protease (USP) domain signature 1.	204	219	-	IPR018200
Coils	Coil	Coil	53	73	-	-
Coils	Coil	Coil	53	73	-	-

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process) GO:0016579 (protein deubiquitination)

Molecular Function:

GO:0004843 (cysteine-type deubiquitinase activity)

KEGG Pathway

KO Term:

K21343 (ubiquitin carboxyl-terminal hydrolase 15 [EC:3.4.19.12])

Pathway:

ko04137 (Mitophagy - animal) map04137 (Mitophagy - animal)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G22030.1	ubiquitin-specific protease 8.
RefSeq	XP_021860333.1	ubiquitin carboxyl-terminal hydrolase 8-like isoform X2 [Spinacia oleracea]
Swiss-Prot	Q9C585	Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2
TrEMBL	A0A7C9EGS7	Ubiquitin carboxyl-terminal hydrolase OS=Opuntia streptacantha OX=393608 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg15180, jg16749, jg22501, jg36058, jg37396, jg8098
Aizoaceae	Mesembryanthemum crystallinum	4	gene_14623, gene_15266, gene_6869, gene_692
Amaranthaceae	Atriplex hortensis	3	Ah004001, Ah016422, Ah027748
Amaranthaceae	Beta vulgaris	4	BVRB_1g013070, BVRB_5g104230, BVRB_5g108750, BVRB_7g171320
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg1453, Sbi_jg15770, Sbi_jg15771, Sbi_jg24154 ... Sbi_jg35107, Sbi_jg40688, Sbi_jg50692, Sbi_jg7995
Amaranthaceae	Salicornia europaea	4	Seu_jg12044, Seu_jg13783, Seu_jg2252, Seu_jg3283
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00003451, GOSA_00010746, GOSA_00026351
Amaranthaceae	Suaeda glauca	8	Sgl44166, Sgl48935, Sgl51333, Sgl52363, Sgl56578, Sgl57655 ... Sgl72711, Sgl76250
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000005045, gene:ENSEOMG00000005973 ... gene:ENSEOMG00000007359, gene:ENSEOMG00000011887, gene:ENSEOMG00000022340, gene:ENSEOMG00000023048, gene:ENSEOMG00000023227, gene:ENSEOMG00000023536, gene:ENSEOMG00000024167, gene:ENSEOMG00000034902, gene:ENSEOMG00000036939, gene:ENSEOMG00000039874, gene:ENSEOMG00000047171
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.5AG0011380, CQ.Regalona.r1.5BG0005110 ... CQ.Regalona.r1.5BG0011820, CQ.Regalona.r1.7AG0005280, CQ.Regalona.r1.8AG0012430, CQ.Regalona.r1.9BG0000540
Anacardiaceae	Pistacia vera	4	pistato.v30055480, pistato.v30074910, pistato.v30133200 ... pistato.v30276840
Apiaceae	Apium graveolens	7	Ag11G04399, Ag1G00062, Ag2G01212, Ag2G01608, Ag3G00677 ... Ag6G02210, AgUnG00997
Arecaceae	Cocos nucifera	4	COCNU_03G000200, COCNU_10G009170, COCNU_15G004400 ... scaffold007358G000010
Arecaceae	Phoenix dactylifera	6	gene-LOC103707607, gene-LOC103710820, gene-LOC103714421 ... gene-LOC103714957, gene-LOC103722919, gene-LOC120103833
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.433.V1.1, AsparagusV1_05.1652.V1.1 ... AsparagusV1_10.135.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G20462, Ftri13G16792, Ftri15G02660, Ftri16G01695 ... Ftri2G16266, Ftri6G05228
Brassicaceae	Arabidopsis thaliana	5	AT1G32850.1, AT2G40930.1, AT4G10570.1, AT4G10590.2 ... AT5G22030.2
Brassicaceae	Eutrema salsugineum	5	Thhalv10006750m.g.v1.0, Thhalv10012650m.g.v1.0 ... Thhalv10016401m.g.v1.0, Thhalv10027354m.g.v1.0, Thhalv10028406m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g28150.v2.2, Sp4g23240.v2.2, Sp6g06860.v2.2 ... Sp6g23160.v2.2
Brassicaceae	Brassica nigra	9	BniB01g004480.2N, BniB01g008660.2N, BniB02g041530.2N ... BniB03g035870.2N, BniB04g049530.2N, BniB05g058320.2N, BniB08g010970.2N, BniB08g035970.2N, BniB08g052090.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq03G0661, Ceq04G0858, Ceq04G1239, Ceq05G1541
Casuarinaceae	Casuarina glauca	8	Cgl03G0751, Cgl04G0962, Cgl04G0963, Cgl04G0964, Cgl04G0965 ... Cgl04G0974, Cgl04G1402, Cgl05G1543
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g00060, gene.Cymno08g02970, gene.Cymno10g04770
Dunaliellaceae	Dunaliella salina	1	Dusal.0299s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g29410, gene.Thate04g05110, gene.Thate04g21560
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.1884, evm.TU.LG01.2662, evm.TU.LG09.547 ... evm.TU.LG10.1627
Plantaginaceae	Plantago ovata	4	Pov_00003074, Pov_00003619, Pov_00025505, Pov_00026576
Plumbaginaceae	Limonium bicolor	10	Lb1G02466, Lb2G10344, Lb2G13622, Lb2G15163, Lb3G20268 ... Lb4G23140, Lb5G28584, Lb5G28851, Lb5G28853, Lb6G29807
Poaceae	Echinochloa crus-galli	12	AH01.2506, AH03.279, AH04.1234, AH05.4108, BH01.2837 ... BH03.357, BH04.1208, BH05.4206, CH01.3043, CH03.429, CH04.1384, CH05.4432
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_2AG0120360, gene-QOZ80_2BG0174840 ... gene-QOZ80_2BG0174850, gene-QOZ80_5AG0398500, gene-QOZ80_5BG0447120, gene-QOZ80_7AG0556150, gene-QOZ80_7BG0587090, gene-QOZ80_9AG0680900, gene-QOZ80_9BG0707130, gene-QOZ80_UnG0728540
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0035690.2, HORVU.MOREX.r3.2HG0152430.1 ... HORVU.MOREX.r3.4HG0365930.1, HORVU.MOREX.r3.5HG0425920.1
Poaceae	Lolium multiflorum	6	gene-QYE76_001172, gene-QYE76_008273, gene-QYE76_010796 ... gene-QYE76_010860, gene-QYE76_042572, gene-QYE76_067043
Poaceae	Oryza coarctata	8	Oco13G001710, Oco14G001850, Oco19G001010, Oco20G001150 ... Oco21G005460, Oco22G006480, Oco23G010770, Oco24G010570
Poaceae	Oryza sativa	7	LOC_Os01g48600.1, LOC_Os07g06610.1, LOC_Os09g17480.1 ... LOC_Os10g07270.1, LOC_Os11g28360.1, LOC_Os11g28365.1, LOC_Os12g42600.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G039200, gene-BS78_05G127000, gene-BS78_K096800 ... gene-BS78_08G153700
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0303555, Pt_Chr0303561, Pt_Chr0501276, Pt_Chr0704572 ... Pt_Chr0704933
Poaceae	Sporobolus alterniflorus	10	Chr06G020260, Chr07G017790, Chr09G006910, Chr0G004600 ... Chr13G017510, Chr13G017540, Chr19G007370, Chr19G017700, Chr27G009360, Chr31G004590
Poaceae	Thinopyrum elongatum	4	Tel1E01G240800, Tel2E01G460100, Tel4E01G276700 ... Tel5E01G066200
Poaceae	Triticum dicoccoides	8	gene_TRIDC1AG020490, gene_TRIDC1BG024290 ... gene_TRIDC2AG033710, gene_TRIDC2BG038310, gene_TRIDC4AG019950, gene_TRIDC4BG023930, gene_TRIDC5AG004000, gene_TRIDC5BG004140
Poaceae	Triticum aestivum	12	TraesCS1A02G137800.3, TraesCS1B02G149400.2 ... TraesCS1D02G132600.2, TraesCS2A02G248500.1, TraesCS2B02G268700.1, TraesCS2D02G250200.1, TraesCS4A02G139900.1, TraesCS4B02G148000.4, TraesCS4D02G153200.3, TraesCS5A02G027000.1, TraesCS5B02G026200.1, TraesCS5D02G034700.1
Poaceae	Zea mays	4	Zm00001eb026810_P002, Zm00001eb090590_P003 ... Zm00001eb134530_P002, Zm00001eb300350_P001
Poaceae	Zoysia japonica	3	nbis-gene-35742, nbis-gene-42352, nbis-gene-44472
Poaceae	Zoysia macrostachya	4	Zma_g15860, Zma_g17881, Zma_g25364, Zma_g4759
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.870, evm.TU.LG04.2760, evm.TU.LG04.3200 ... evm.TU.LG08.423, evm.TU.LG16.404, evm.TU.LG19.1110, evm.TU.LG23.144, evm.TU.LG24.1111
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g00190, gene.Posoc05g04310, gene.Posoc06g08640
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_13_RagTag.560, evm.TU.Scaffold_16_RagTag.22 ... evm.TU.Scaffold_1_RagTag.1317, evm.TU.Scaffold_2_RagTag.1072, evm.TU.Scaffold_2_RagTag.1073, evm.TU.Scaffold_8_RagTag.213
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-10111, nbisL1-mrna-10113, nbisL1-mrna-22236 ... nbisL1-mrna-22269, nbisL1-mrna-30510, nbisL1-mrna-4114
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-11243, nbisL1-mrna-13319, nbisL1-mrna-17327 ... nbisL1-mrna-18149, nbisL1-mrna-19322
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-10174, nbisL1-mrna-15946, nbisL1-mrna-17840 ... nbisL1-mrna-20455, nbisL1-mrna-4126
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000009l.604, evm.TU.utg000015l.297 ... evm.TU.utg000016l.389, evm.TU.utg000018l.857, evm.TU.utg000022l.483
Rhizophoraceae	Kandelia obovata	3	Maker00003014, Maker00015233, Maker00017169
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-12514, nbisL1-mrna-3149, nbisL1-mrna-3626 ... nbisL1-mrna-4215, nbisL1-mrna-7559, nbisL1-mrna-7560
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-11389, nbisL1-mrna-13494, nbisL1-mrna-15234 ... nbisL1-mrna-5682, nbisL1-mrna-6822
Salicaceae	Populus euphratica	7	populus_peu00224, populus_peu02478, populus_peu10782 ... populus_peu12390, populus_peu17229, populus_peu25987, populus_peu26318
Solanaceae	Lycium barbarum	4	gene-LOC132603622, gene-LOC132603822, gene-LOC132631635 ... gene-LOC132634695
Solanaceae	Solanum chilense	3	SOLCI000958500, SOLCI001556500, SOLCI003648000
Solanaceae	Solanum pennellii	3	gene-LOC107023873, gene-LOC107027916, gene-LOC107031377
Tamaricaceae	Reaumuria soongarica	5	gene_11654, gene_13537, gene_15447, gene_15448, gene_3657
Tamaricaceae	Tamarix chinensis	5	TC01G4483, TC06G0156, TC06G1181, TC09G0663, TC11G1297
Zosteraceae	Zostera marina	3	Zosma03g27640.v3.1, Zosma04g00580.v3.1, Zosma04g01490.v3.1