Basic Information
Locus ID:
Lb1G02423
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Casein Kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 266868524 | 266872078 | + | Lb1G02423 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 13,977.01 Da | 35.80 | 93.72 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 17 | 90 | 9.2E-8 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 17 | 90 | 9.2E-8 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 8 | 91 | 1.94E-17 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 8 | 91 | 1.94E-17 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 8 | 109 | 4.1E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 8 | 109 | 4.1E-20 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 129 | 11.990592 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 129 | 11.990592 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 53 | 65 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 53 | 65 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13670.1 | Protein kinase family protein. | 0 |
| RefSeq | XP_040958876.1 | casein kinase 1-like protein HD16 [Gossypium hirsutum] | 0 |
| Q852L0 | Casein kinase 1-like protein HD16 OS=Oryza sativa subsp. japonica OX=39947 GN=HD16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D2NLS0 | Protein kinase domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_006G042700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2765.V1.1 |
| Brassicaceae | Brassica nigra | 1 | BniB03g041870.2N |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G02423, Lb5G27269, Lb6G32216, Lb6G32217 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000023l.39 |