Basic Information
Locus ID:
Lb1G02226
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 257081932 | 257085211 | + | Lb1G02226 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 29,746.20 Da | 53.65 | 65.99 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 123 | 184 | 1.07275E-10 | - |
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 123 | 184 | 1.07275E-10 | - |
| Pfam | PF12906 | RING-variant domain | 123 | 183 | 5.7E-10 | IPR011016 |
| Pfam | PF12906 | RING-variant domain | 123 | 183 | 5.7E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 120 | 186 | 6.36E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 120 | 186 | 6.36E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 194 | 4.8E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 194 | 4.8E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 122 | 184 | 4.5E-17 | IPR011016 |
| SMART | SM00744 | ringv_2 | 122 | 184 | 4.5E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 115 | 190 | 17.549459 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 115 | 190 | 17.549459 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 52 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_028240376.1 | uncharacterized protein LOC114419001 isoform X2 [Glycine soja] | 0 |
| TrEMBL | A0A0R0J340 | RING-CH-type domain-containing protein OS=Glycine max OX=3847 GN=100808666 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology