Basic Information
Locus ID:
Lb1G02166
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the ClpA ClpB family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 253834417 | 253840765 | - | Lb1G02166 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 109,428.39 Da | 39.70 | 91.92 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 265 | 420 | 1.86193E-24 | - |
| CDD | cd00009 | AAA | 659 | 807 | 2.22455E-18 | - |
| CDD | cd00009 | AAA | 659 | 807 | 2.22455E-18 | - |
| CDD | cd00009 | AAA | 265 | 420 | 1.86193E-24 | - |
| Pfam | PF10431 | C-terminal, D2-small domain, of ClpB protein | 856 | 935 | 9.1E-26 | IPR019489 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 287 | 418 | 2.0E-13 | IPR003959 |
| Pfam | PF07724 | AAA domain (Cdc48 subfamily) | 684 | 849 | 1.8E-55 | IPR003959 |
| Pfam | PF17871 | AAA lid domain | 426 | 527 | 3.7E-33 | IPR041546 |
| Pfam | PF02861 | Clp amino terminal domain, pathogenicity island component | 103 | 152 | 3.0E-15 | IPR004176 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 287 | 418 | 2.0E-13 | IPR003959 |
| Pfam | PF02861 | Clp amino terminal domain, pathogenicity island component | 178 | 229 | 2.5E-10 | IPR004176 |
| Pfam | PF02861 | Clp amino terminal domain, pathogenicity island component | 103 | 152 | 3.0E-15 | IPR004176 |
| Pfam | PF07724 | AAA domain (Cdc48 subfamily) | 684 | 849 | 1.8E-55 | IPR003959 |
| Pfam | PF17871 | AAA lid domain | 426 | 527 | 3.7E-33 | IPR041546 |
| Pfam | PF02861 | Clp amino terminal domain, pathogenicity island component | 178 | 229 | 2.5E-10 | IPR004176 |
| Pfam | PF10431 | C-terminal, D2-small domain, of ClpB protein | 856 | 935 | 9.1E-26 | IPR019489 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 243 | 633 | 7.09E-101 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 243 | 633 | 7.09E-101 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 634 | 937 | 1.95E-82 | IPR027417 |
| SUPERFAMILY | SSF81923 | Double Clp-N motif | 89 | 240 | 3.04E-37 | IPR036628 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 634 | 937 | 1.95E-82 | IPR027417 |
| SUPERFAMILY | SSF81923 | Double Clp-N motif | 89 | 240 | 3.04E-37 | IPR036628 |
| Gene3D | G3DSA:3.40.50.300 | - | 427 | 632 | 4.2E-69 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 233 | 426 | 2.6E-84 | IPR027417 |
| Gene3D | G3DSA:1.10.1780.10 | - | 86 | 232 | 7.5E-37 | IPR036628 |
| Gene3D | G3DSA:1.10.8.60 | - | 856 | 951 | 3.0E-28 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 637 | 854 | 1.2E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 427 | 632 | 4.2E-69 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 637 | 854 | 1.2E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 233 | 426 | 2.6E-84 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 856 | 951 | 3.0E-28 | - |
| Gene3D | G3DSA:1.10.1780.10 | - | 86 | 232 | 7.5E-37 | IPR036628 |
| SMART | SM01086 | ClpB_D2_small_2 | 856 | 942 | 3.5E-33 | IPR019489 |
| SMART | SM01086 | ClpB_D2_small_2 | 856 | 942 | 3.5E-33 | IPR019489 |
| SMART | SM00382 | AAA_5 | 685 | 857 | 9.4E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 282 | 426 | 5.9E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 282 | 426 | 5.9E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 685 | 857 | 9.4E-10 | IPR003593 |
| TIGRFAM | TIGR03346 | chaperone_ClpB: ATP-dependent chaperone protein ClpB | 90 | 939 | 0.0 | IPR017730 |
| TIGRFAM | TIGR03346 | chaperone_ClpB: ATP-dependent chaperone protein ClpB | 90 | 939 | 0.0 | IPR017730 |
| ProSiteProfiles | PS51903 | Clp repeat (R) domain profile. | 86 | 230 | 48.470917 | IPR004176 |
| ProSiteProfiles | PS51903 | Clp repeat (R) domain profile. | 86 | 230 | 48.470917 | IPR004176 |
| ProSitePatterns | PS00870 | Chaperonins clpA/B signature 1. | 378 | 390 | - | IPR018368 |
| ProSitePatterns | PS00871 | Chaperonins clpA/B signature 2. | 719 | 737 | - | IPR028299 |
| ProSitePatterns | PS00870 | Chaperonins clpA/B signature 1. | 378 | 390 | - | IPR018368 |
| ProSitePatterns | PS00871 | Chaperonins clpA/B signature 2. | 719 | 737 | - | IPR028299 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 763 | 781 | 1.8E-40 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 689 | 707 | 1.8E-40 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 796 | 810 | 1.8E-40 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 689 | 707 | 1.8E-40 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 796 | 810 | 1.8E-40 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 734 | 752 | 1.8E-40 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 763 | 781 | 1.8E-40 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 734 | 752 | 1.8E-40 | IPR001270 |
| Coils | Coil | Coil | 336 | 356 | - | - |
| Coils | Coil | Coil | 525 | 545 | - | - |
| Coils | Coil | Coil | 556 | 617 | - | - |
| Coils | Coil | Coil | 556 | 617 | - | - |
| Coils | Coil | Coil | 336 | 356 | - | - |
| Coils | Coil | Coil | 525 | 545 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15450.1 | casein lytic proteinase B3. Encodes a chloroplast-targeted Hsp101 homologue. Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress. APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves. APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses. Apg6 mutants have a pale-green phenotype. | 0 |
| RefSeq | XP_021770907.1 | LOW QUALITY PROTEIN: chaperone protein ClpB3, chloroplastic-like [Chenopodium quinoa] | 0 |
| Q9LF37 | Chaperone protein ClpB3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPB3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A218VX25 | Clp R domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr020508 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology