Basic Information
Locus ID:
Lb1G01914
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 242123207 | 242128083 | + | Lb1G01914 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 50,199.19 Da | 64.94 | 79.79 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 80 | 153 | 2.45541E-31 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 228 | 277 | 9.72627E-31 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 228 | 277 | 9.72627E-31 | - |
| CDD | cd01805 | Ubl_Rad23 | 80 | 153 | 2.45541E-31 | - |
| Pfam | PF00240 | Ubiquitin family | 82 | 155 | 2.0E-18 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 421 | 456 | 2.6E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 235 | 272 | 1.1E-13 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 235 | 272 | 1.1E-13 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 341 | 396 | 9.6E-23 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 82 | 155 | 2.0E-18 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 341 | 396 | 9.6E-23 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 421 | 456 | 2.6E-12 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 80 | 158 | 1.98E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 232 | 282 | 2.27E-11 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 402 | 462 | 4.09E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 339 | 402 | 4.45E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 232 | 282 | 2.27E-11 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 80 | 158 | 1.98E-22 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 339 | 402 | 4.45E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 402 | 462 | 4.09E-15 | IPR009060 |
| Gene3D | G3DSA:1.10.10.540 | - | 332 | 397 | 3.3E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 332 | 397 | 3.3E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 413 | 461 | 2.2E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 76 | 158 | 8.6E-29 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 227 | 277 | 1.9E-21 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 227 | 277 | 1.9E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 76 | 158 | 8.6E-29 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 413 | 461 | 2.2E-23 | - |
| SMART | SM00213 | ubq_7 | 80 | 154 | 4.7E-20 | IPR000626 |
| SMART | SM00165 | uba_6 | 421 | 458 | 2.6E-8 | IPR015940 |
| SMART | SM00727 | CBM | 339 | 382 | 1.2E-4 | IPR006636 |
| SMART | SM00165 | uba_6 | 234 | 274 | 9.4E-6 | IPR015940 |
| SMART | SM00213 | ubq_7 | 80 | 154 | 4.7E-20 | IPR000626 |
| SMART | SM00727 | CBM | 339 | 382 | 1.2E-4 | IPR006636 |
| SMART | SM00165 | uba_6 | 421 | 458 | 2.6E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 234 | 274 | 9.4E-6 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 80 | 461 | 1.2E-112 | IPR004806 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 80 | 461 | 1.2E-112 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 80 | 158 | 19.803936 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 232 | 275 | 12.233631 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 418 | 459 | 14.137302 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 80 | 158 | 19.803936 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 232 | 275 | 12.233631 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 418 | 459 | 14.137302 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 415 | 431 | 9.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 432 | 446 | 9.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 447 | 462 | 9.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 432 | 446 | 9.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 367 | 389 | 9.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 367 | 389 | 9.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 415 | 431 | 9.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 447 | 462 | 9.1E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 179 | - | - |
| Coils | Coil | Coil | 368 | 388 | - | - |
| Coils | Coil | Coil | 368 | 388 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_052199593.1 | ubiquitin receptor RAD23c-like isoform X2 [Diospyros lotus] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A1Q3C6B9 | Ubiquitin receptor RAD23 OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_19139 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology