halophFGD

Basic Information

Locus ID: Lb1G01909

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Dcp1-like decapping family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr01	241944257	241951633	+	Lb1G01909

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.23	79,340.67 Da	49.23	74.99	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd13182	EVH1-like_Dcp1	71	185	1.09752E-37	-
CDD	cd13182	EVH1-like_Dcp1	71	185	1.09752E-37	-
Pfam	PF06058	Dcp1-like decapping family	71	178	1.1E-26	IPR010334
Pfam	PF10536	Plant mobile domain	269	390	3.2E-22	IPR019557
Pfam	PF06058	Dcp1-like decapping family	71	178	1.1E-26	IPR010334
Pfam	PF10536	Plant mobile domain	269	390	3.2E-22	IPR019557
SUPERFAMILY	SSF50729	PH domain-like	71	187	4.92E-25	-
SUPERFAMILY	SSF50729	PH domain-like	71	187	4.92E-25	-
Gene3D	G3DSA:2.30.29.30	-	60	188	4.7E-32	IPR011993
Gene3D	G3DSA:2.30.29.30	-	60	188	4.7E-32	IPR011993
MobiDBLite	mobidb-lite	consensus disorder prediction	654	671	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	527	565	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	654	671	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	654	685	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	22	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	527	565	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	654	685	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	22	-	-

Gene Ontology

Biological Process:

GO:0000290 (deadenylation-dependent decapping of nuclear-transcribed mRNA) GO:0043085 (positive regulation of catalytic activity)

Molecular Function:

GO:0008047 (enzyme activator activity)

KEGG Pathway

KO Term:

K12611 (mRNA-decapping enzyme 1B [EC:3.-.-.-])

Pathway:

ko03018 (RNA degradation) map03018 (RNA degradation)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_042511164.1	mRNA-decapping enzyme-like protein isoform X1 [Macadamia integrifolia]	0
TrEMBL	A0A5J4ZHP8	mRNA-decapping enzyme-like protein OS=Nyssa sinensis OX=561372 GN=F0562_017035 PE=3 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Plumbaginaceae	Limonium bicolor	139	Lb0G36958, Lb0G37625, Lb0G37651, Lb0G37832, Lb1G00074 ... Lb1G01041, Lb1G01284, Lb1G01302, Lb1G01313, Lb1G01909, Lb1G02090, Lb1G02171, Lb1G02262, Lb1G02725, Lb1G03091, Lb1G03104, Lb1G03576, Lb1G03653, Lb1G03691, Lb1G03810, Lb1G04104, Lb1G04204, Lb1G04764, Lb1G04782, Lb1G04978, Lb1G05127, Lb1G05421, Lb1G06522, Lb1G06694, Lb1G06709, Lb1G06915, Lb1G07575, Lb1G07974, Lb2G08452, Lb2G08754, Lb2G08786, Lb2G09330, Lb2G09354, Lb2G09788, Lb2G09791, Lb2G09872, Lb2G10149, Lb2G10277, Lb2G10339, Lb2G10401, Lb2G10547, Lb2G10571, Lb2G10595, Lb2G10645, Lb2G10858, Lb2G11128, Lb2G11176, Lb2G11301, Lb2G11392, Lb2G11722, Lb2G11723, Lb2G11726, Lb2G11880, Lb2G11994, Lb2G12006, Lb2G12180, Lb2G13380, Lb2G13858, Lb2G14192, Lb2G14385, Lb2G14802, Lb2G14815, Lb2G15389, Lb3G15874, Lb3G15888, Lb3G16904, Lb3G17648, Lb3G18076, Lb3G18459, Lb3G18462, Lb3G18835, Lb3G19004, Lb3G19049, Lb3G19141, Lb3G19410, Lb3G19564, Lb3G19669, Lb3G19745, Lb3G19968, Lb3G20348, Lb3G20349, Lb3G20424, Lb3G20556, Lb3G20584, Lb3G20837, Lb3G20990, Lb3G20991, Lb3G21080, Lb4G21491, Lb4G21493, Lb4G21495, Lb4G22778, Lb4G23783, Lb4G23798, Lb4G23803, Lb4G24071, Lb4G24085, Lb4G24086, Lb4G24642, Lb4G24910, Lb4G24972, Lb4G25774, Lb4G25880, Lb5G26602, Lb5G26603, Lb5G26645, Lb5G27050, Lb5G27731, Lb5G27935, Lb5G27936, Lb5G28415, Lb5G29025, Lb5G29564, Lb6G30134, Lb6G30265, Lb6G30266, Lb6G30292, Lb6G30447, Lb6G30649, Lb6G31356, Lb6G31492, Lb6G31691, Lb6G31840, Lb6G32579, Lb7G33114, Lb7G33326, Lb7G33404, Lb7G34305, Lb7G35257, Lb7G35440, Lb7G35441, Lb8G36625, Lb8G36627, Lb8G36629