Basic Information
Locus ID:
Lb1G01764
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 235147494 | 235149060 | + | Lb1G01764 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 32,109.17 Da | 37.98 | 69.64 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 45 | 289 | 3.4E-57 | IPR001223 |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 45 | 289 | 3.4E-57 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 43 | 275 | 4.88E-57 | IPR017853 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 43 | 275 | 4.88E-57 | IPR017853 |
| Gene3D | G3DSA:3.10.50.10 | - | 266 | 305 | 5.6E-80 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 50 | 265 | 5.6E-80 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 266 | 305 | 5.6E-80 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 50 | 265 | 5.6E-80 | - |
| SMART | SM00636 | 2g34 | 12 | 306 | 4.4E-41 | IPR011583 |
| SMART | SM00636 | 2g34 | 12 | 306 | 4.4E-41 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 33 | 306 | 49.649918 | IPR001223 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 33 | 306 | 49.649918 | IPR001223 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_042960759.1 | class V chitinase-like [Carya illinoinensis] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9AIZ0 | GH18 domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology