Basic Information
Locus ID:
Lb1G01678
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the peptidase A1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 226073424 | 226076097 | - | Lb1G01678 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 53,321.24 Da | 42.88 | 83.49 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05476 | pepsin_A_like_plant | 202 | 495 | 2.03489E-76 | IPR034161 |
| CDD | cd05476 | pepsin_A_like_plant | 202 | 495 | 2.03489E-76 | IPR034161 |
| Pfam | PF14541 | Xylanase inhibitor C-terminal | 374 | 447 | 2.5E-6 | IPR032799 |
| Pfam | PF14543 | Xylanase inhibitor N-terminal | 234 | 347 | 2.3E-25 | IPR032861 |
| Pfam | PF14541 | Xylanase inhibitor C-terminal | 374 | 447 | 2.5E-6 | IPR032799 |
| Pfam | PF14543 | Xylanase inhibitor N-terminal | 234 | 347 | 2.3E-25 | IPR032861 |
| SUPERFAMILY | SSF50630 | Acid proteases | 198 | 489 | 1.62E-56 | IPR021109 |
| SUPERFAMILY | SSF50630 | Acid proteases | 198 | 489 | 1.62E-56 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 179 | 345 | 7.0E-34 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 346 | 454 | 1.5E-15 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 346 | 454 | 1.5E-15 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 179 | 345 | 7.0E-34 | IPR021109 |
| ProSiteProfiles | PS51767 | Peptidase family A1 domain profile. | 203 | 502 | 29.483353 | IPR033121 |
| ProSiteProfiles | PS51767 | Peptidase family A1 domain profile. | 203 | 502 | 29.483353 | IPR033121 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 398 | 409 | - | IPR001969 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 398 | 409 | - | IPR001969 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 218 | 229 | - | IPR001969 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 218 | 229 | - | IPR001969 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 398 | 409 | 4.9E-5 | IPR001461 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 209 | 229 | 4.9E-5 | IPR001461 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 209 | 229 | 4.9E-5 | IPR001461 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 398 | 409 | 4.9E-5 | IPR001461 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G33340.1 | Eukaryotic aspartyl protease family protein. Encodes a protein with aspartic protease activity (also known as aspartate-type endopeptidase activity). Overexpression of the gene was shown to lead to salicylic acid (SA)-mediated disease resistance upon exposure to the pathogen Pseudomonas syringae. Moreover, overexpression of this gene led to the upregulation of two pathogenesis-related genes PR1 and PR2. This upregulation was no longer observed in transgenic lines expressing the bacterial NahG gene encoding a hydroxylase suppressing SA accumulation. | 0 |
| RefSeq | XP_021895412.1 | aspartic proteinase CDR1-like [Carica papaya] | 0 |
| Q6XBF8 | Aspartic proteinase CDR1 OS=Arabidopsis thaliana OX=3702 GN=CDR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N5HZ27 | Aspartic proteinase CDR1-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_028374 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology