Basic Information
Locus ID:
Lb1G01572
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
PHD finger protein MALE MEIOCYTE DEATH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 221627138 | 221629467 | - | Lb1G01572 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 84,362.60 Da | 47.13 | 82.34 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 660 | 705 | 1.18751E-22 | - |
| CDD | cd15556 | PHD_MMD1_like | 660 | 705 | 1.18751E-22 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 646 | 710 | 5.32E-14 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 646 | 710 | 5.32E-14 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 649 | 710 | 2.4E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 649 | 710 | 2.4E-15 | IPR013083 |
| SMART | SM00249 | PHD_3 | 660 | 706 | 1.5E-7 | IPR001965 |
| SMART | SM00249 | PHD_3 | 660 | 706 | 1.5E-7 | IPR001965 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 661 | 705 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 661 | 705 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66170.1 | RING/FYVE/PHD zinc finger superfamily protein. encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus. | 0 |
| RefSeq | XP_034208280.1 | PHD finger protein MALE MEIOCYTE DEATH 1 [Prunus dulcis] | 0 |
| Q7X6Y7 | PHD finger protein MALE MEIOCYTE DEATH 1 OS=Arabidopsis thaliana OX=3702 GN=MMD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5E4GJH2 | PREDICTED: PHD OS=Prunus dulcis OX=3755 GN=ALMOND_2B027419 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology