Basic Information
Locus ID:
Lb1G01316
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 199288357 | 199298486 | + | Lb1G01316 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 88,968.77 Da | 51.70 | 71.72 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 214 | 364 | 1.55358E-28 | - |
| CDD | cd12108 | Hr-like | 214 | 364 | 1.55358E-28 | - |
| Pfam | PF05495 | CHY zinc finger | 574 | 649 | 8.9E-19 | IPR008913 |
| Pfam | PF05495 | CHY zinc finger | 574 | 649 | 8.9E-19 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 640 | 696 | 8.24E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 567 | 630 | 5.62E-8 | IPR037274 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 567 | 630 | 5.62E-8 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 640 | 696 | 8.24E-15 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 204 | 429 | 1.2E-23 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 204 | 429 | 1.2E-23 | - |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 567 | 636 | 24.649437 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 703 | 775 | 8.550227 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 567 | 636 | 24.649437 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 639 | 702 | 27.477404 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 703 | 775 | 8.550227 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 639 | 702 | 27.477404 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_024950374.1 | zinc finger protein BRUTUS-like isoform X3 [Citrus sinensis] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YHY9 | Zinc finger protein BRUTUS OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology